SRR1781440_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781440_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	419923
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGT	187712	44.70152861357916	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCG	13438	3.200110496448158	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCC	8961	2.1339626550581894	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2405	0.5727240470276693	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCC	2324	0.5534347963793362	No Hit
ATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGTCTT	1674	0.398644513398885	RNA PCR Primer, Index 36 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGTC	1238	0.29481595435353625	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGTAAACAATCTCGTATGCCGT	1134	0.27004950907666403	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCG	904	0.21527756279127366	No Hit
ATTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGT	635	0.15121819952705615	No Hit
CCTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCG	623	0.14836053276434014	No Hit
CTTTACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGTC	557	0.132643365569402	No Hit
CTAATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGT	535	0.12740430983775597	No Hit
TTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGTC	485	0.11549736499310587	No Hit
CATATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGT	478	0.11383039271485487	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGTAAACATCTCGTATGCCGTC	452	0.10763878139563683	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGACCGG	15	0.0022215927	70.01846	36
AAGTTCG	15	0.0022215927	70.01846	38
CATAACG	30	1.02083504E-7	70.01846	36
TAGCGCA	15	0.0022247434	69.993454	9
CGACTAT	15	0.0022247434	69.993454	25
AGGGGGG	21040	0.0	68.13051	70
AAGGGGG	22585	0.0	63.423336	69
CATCACG	50	1.4551915E-11	63.01662	36
TAACGTA	35	2.9659714E-7	60.015827	38
AAAGGGG	23950	0.0	59.852436	68
AAAAGGG	24065	0.0	59.66822	67
CCGTCTT	23525	0.0	59.63948	47
GCCGTCT	23585	0.0	59.576794	46
TATGCCG	23660	0.0	59.55773	43
CGTCTTC	23580	0.0	59.544888	48
TGCCGTC	23605	0.0	59.541138	45
AAAAAGG	24170	0.0	59.524837	66
AAAAAAG	24285	0.0	59.516773	65
ATGCCGT	23655	0.0	59.511135	44
GTATGCC	23705	0.0	59.49605	42