SRR1781435_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781435_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1180910
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGT	195661	16.568663149604966	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCG	13683	1.1586827107908308	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCC	8836	0.7482365294560974	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCC	2506	0.2122092284763445	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2287	0.1936642081106943	No Hit
ATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGTCTT	1748	0.14802144109203919	Illumina PCR Primer Index 7 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACAAACGGTCATCTCGTATGCCGTC	1275	0.10796758432056634	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	22365	67.23858	70
AAGGGGG	24325	61.76325	69
CCGTCTT	24570	59.23203	47
CGTCTTC	24440	59.20087	48
GCCGTCT	24645	59.122776	46
ATGCCGT	25005	59.09743	44
TGCCGTC	24800	59.063747	45
TATGCCG	25035	58.98467	43
CGTATGC	25120	58.801506	41
TCGTATG	25125	58.792294	40
CTCGTAT	25100	58.767178	39
GTATGCC	25210	58.644638	42
TCTCGTA	25205	58.5918	38
GCTTGAA	25155	58.536324	56
TGCTTGA	24860	58.484745	55
GTCTTCT	24595	58.472027	49
ATCTCGT	25320	58.325687	37
CTGCTTG	24705	58.28498	54
AAAGGGG	25895	58.099663	68
CATCTCG	25425	58.098576	36