SRR1781433_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781433_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	254010
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	134752	53.04987992598716	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCG	11886	4.679343332939648	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCC	6668	2.6250935002558955	No Hit
CATATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	3330	1.3109720089760246	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCC	1927	0.7586315499389787	No Hit
ATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTCTT	1397	0.5499783473091611	TruSeq Adapter, Index 9 (95% over 21bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1013	0.3988031967245384	No Hit
CTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTC	993	0.39092949096492263	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCG	731	0.28778394551395614	No Hit
CTAATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	648	0.2551080666115507	No Hit
CCTTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCG	511	0.20117318215818275	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTC	451	0.17755206487933545	No Hit
TTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTC	444	0.17479626786346994	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGT	377	0.14841935356875713	No Hit
CTTAATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCG	317	0.12479823628990985	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTATTCGATCTCGTATGCCGTC	304	0.11968032754615959	RNA PCR Primer, Index 42 (95% over 21bp)
TATACACATCTCCGAGCCCACGAGACGTATTCGGATCTCGTATGCCGTCT	279	0.1098381953466399	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAACA	30	1.0185249E-7	70.025215	34
TCGGAAC	60	0.0	70.025215	33
ACGGAAC	20	7.902634E-5	70.025215	33
TAAGCCC	20	7.902634E-5	70.025215	43
TAAGACG	30	1.0185249E-7	70.025215	43
CGGAAAT	35	3.6870915E-9	70.02521	34
ATTCGAT	50	0.0	70.02521	31
CGTAAGA	25	2.8285613E-6	70.02521	41
TTCGATC	50	0.0	70.02521	32
AAGACGA	15	0.0022214649	70.01143	44
AAGCCGA	15	0.0022214649	70.01143	44
TATTCGA	60	0.0	70.01143	30
CGAAATC	50	0.0	70.01142	28
ATGCCGA	70	0.0	70.01142	44
GTCTAAA	20	7.918069E-5	69.99764	49
AGTCTAA	20	7.918069E-5	69.99764	48
TGCCGAC	65	0.0	69.99764	45
TATCCGA	60	0.0	69.997635	11
ATATCCG	65	0.0	69.983864	10
ATACGCA	20	7.925796E-5	69.983864	4