SRR1781418_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781418_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	392271
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	157168	40.06617873867811	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCG	12251	3.1230960229025344	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	7315	1.864782255124646	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCC	1867	0.47594647577822474	No Hit
CATATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	1699	0.43311894073229984	No Hit
ATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTCTT	1302	0.33191339660591784	RNA PCR Primer, Index 37 (95% over 22bp)
CTAATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	1117	0.2847521228946315	No Hit
CTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTC	1061	0.2704762778793232	No Hit
CTTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCG	715	0.18227194974902552	No Hit
CCTTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCG	582	0.14836681783766834	No Hit
CTTTACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTC	468	0.11930527619936218	No Hit
TTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGTC	429	0.10936316984941533	No Hit
ATTATACACATCTCCGAGCCCACGAGACATGGGAACATCTCGTATGCCGT	429	0.10936316984941533	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATAACG	20	7.907903E-5	70.025375	36
TCGTATC	20	7.9129E-5	70.01645	40
CGTATCC	20	7.9179E-5	70.00752	41
ACCCGAA	15	0.0022251098	69.98968	19
AGGGGGG	18385	0.0	67.84743	70
ATCTCGA	135	0.0	67.43185	37
CTCGAAT	145	0.0	62.781372	39
ACTCCGA	95	0.0	62.62234	11
AACACGA	45	3.8562575E-10	62.21304	19
ACTCGTA	85	0.0	61.787106	38
TCGTAAG	170	0.0	61.779224	40
CGTAAGC	170	0.0	61.771347	41
CCGTCTA	85	0.0	61.76347	47
AAGGGGG	20200	0.0	61.70872	69
CCGTCAT	125	0.0	61.598766	47
CTAATAC	355	0.0	61.148926	1
TAAGCCG	155	0.0	60.974293	43
TCGAATG	150	0.0	60.680923	40
CGAATGC	145	0.0	60.351315	41
TCGAAAG	35	2.9660623E-7	60.014103	40