SRR1781416_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781416_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	617613
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGT	174435	28.243414565431753	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCG	13714	2.2204843486131285	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCC	9061	1.467099947701878	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCC	2306	0.3733729698047159	No Hit
CATATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGT	1763	0.28545383597819346	No Hit
ATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGTCTT	1672	0.27071969016196223	RNA PCR Primer, Index 36 (95% over 21bp)
CTAATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGT	1151	0.18636265752178144	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGTAAACAATCTCGTATGCCGT	1143	0.18506734799947538	No Hit
CTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGTC	1134	0.1836101247868811	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCG	864	0.13989342840905228	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGTA	15	0.0022254158	69.992065	26
CGACACG	15	0.0022254158	69.992065	23
CGACTAA	15	0.0022254158	69.992065	48
AGGGGGG	20285	0.0	67.73203	70
TGCCGAC	125	0.0	64.3927	45
AAGGGGG	22040	0.0	62.354546	69
CGACTTC	110	0.0	60.447693	48
ATGCCGA	140	0.0	59.998055	44
ACGGGGG	70	0.0	59.993195	70
AAAGGGG	23265	0.0	59.146526	68
TGCCGTC	22650	0.0	59.114716	45
GCCGTCT	22615	0.0	59.11335	46
CCGTCTT	22535	0.0	59.090263	47
CGTCTTC	22650	0.0	59.03746	48
ATGCCGT	22710	0.0	59.009537	44
TATGCCG	22735	0.0	58.944645	43
CGTATGC	22910	0.0	58.88585	41
CTCGTAT	22950	0.0	58.864243	39
AAAAGGG	23450	0.0	58.859	67
GTATGCC	22800	0.0	58.85812	42