Basic Statistics
Measure | Value |
---|---|
Filename | SRR1781412_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 340655 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 79 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 194594 | 57.12348270244089 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGACGAG | 20 | 7.916576E-5 | 70.0072 | 22 |
CTTCGCC | 15 | 0.0022226481 | 70.007195 | 12 |
CGAAGAT | 15 | 0.0022252405 | 69.986626 | 25 |
GGACGGC | 25 | 2.3943673E-4 | 55.972862 | 6 |
TACACGT | 25 | 2.3943673E-4 | 55.972862 | 5 |
CGTTGTT | 20 | 0.006945027 | 52.5054 | 13 |
ATTCCGG | 20 | 0.006945027 | 52.5054 | 52 |
GACGAGC | 20 | 0.006949065 | 52.497684 | 23 |
TTCGGCA | 20 | 0.006957145 | 52.48226 | 32 |
GCCGTAT | 100 | 0.0 | 49.01224 | 54 |
CGTATCA | 105 | 0.0 | 46.698917 | 56 |
CGACGAA | 45 | 1.6810791E-6 | 46.671467 | 22 |
GACGACA | 30 | 5.874816E-4 | 46.664608 | 23 |
CACGTCT | 30 | 5.8833323E-4 | 46.650898 | 7 |
CCGTATC | 100 | 0.0 | 45.524746 | 55 |
GGTCGCC | 125 | 0.0 | 44.804604 | 50 |
CGCCGTA | 110 | 0.0 | 44.550037 | 53 |
TGGTCGC | 110 | 0.0 | 41.36789 | 49 |
GTAGATC | 170 | 0.0 | 41.14443 | 38 |
GACTCCC | 35 | 0.001253889 | 40.004116 | 12 |