SRR1781405_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781405_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	477807
Sequences flagged as poor quality	0
Sequence length	76
%GC	83

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	269086	56.31688108378488	No Hit
CTTATACACATCTGACGCTGCCGACGAACCGCCCAGTGTAGATCTCGGTG	10939	2.2894181123340593	No Hit
TCTTATACACATCTGACGCTGCCGACGAACCGCCCAGTGTAGATCTCGGT	1102	0.23063705638469087	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	937	0.19610428478444222	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	630	0.1318524006554948	No Hit
GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	628	0.1314338216057948	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	576	0.12055076631359524	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	537	0.11238847484444556	No Hit
CTCTTATACACATCTGACGCTGCCGACGAACCGCCCAGTGTAGATCTCGG	532	0.11134202722019561	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	510	0.10673765767349579	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATTTGG	15	0.0022226006	70.01195	58
ACCGGGA	20	7.933629E-5	69.98262	20
TAACCCG	15	0.0022262968	69.98262	17
ATACCGT	15	0.0022290722	69.96065	5
GTATACG	15	0.0022318498	69.93868	2
ACGCGTC	75	0.0	65.2966	6
TATGCGC	55	0.0	63.58727	3
TGGCCGT	45	3.8380676E-10	62.24588	52
CGCGTGT	40	1.0701115E-8	61.215565	7
TATACGC	100	0.0	59.4541	3
TTGTGCG	195	0.0	59.17888	2
GGGCGTA	30	8.35896E-6	58.3494	53
GTTAGAC	30	8.400579E-6	58.300537	1
TTAGACG	30	8.416231E-6	58.282234	2
TGCGCGT	145	0.0	57.89846	5
CGCGTCT	230	0.0	57.793575	7
TCTGGCG	365	0.0	57.507915	11
CGACGAG	110	0.0	57.246517	22
ATGTCGG	50	9.731593E-10	56.044785	42
CGGTATC	25	2.3863671E-4	56.015423	55