SRR1781384_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781384_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	681404
Sequences flagged as poor quality	0
Sequence length	76
%GC	74

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	340932	50.033753837664584	No Hit
CTTATACACATCTGACGCTGCCGACGAGCTCTTGAGTGTAGATCTCGGTG	10781	1.5821744515735159	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCTCTTGAGTGTAGATCTCGGT	1224	0.17962911870197418	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	763	0.11197468755686787	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATCTC	20	7.939157E-5	69.977104	5
CGCGTCT	105	0.0	56.648132	7
CCGTATC	1770	0.0	55.171688	55
CGTATCA	1800	0.0	54.835514	56
CGCCGTA	1805	0.0	54.683617	53
GCCGTAT	1795	0.0	54.598278	54
TCGCCGT	1820	0.0	54.040615	52
GTCGCCG	1900	0.0	53.238964	51
GGTCGCC	1900	0.0	53.054745	50
TCTCGGT	1865	0.0	52.959347	43
TGGCGCT	245	0.0	52.83986	13
GTGGTCG	1915	0.0	52.82195	48
TGGTCGC	1890	0.0	52.590828	49
TTACCGA	20	0.006931593	52.536797	38
TATCGAA	20	0.0069497335	52.50209	48
TCGGTAG	20	0.0069497335	52.50209	60
TCGAAGA	20	0.0069497335	52.50209	50
ATTGACG	20	0.006955788	52.490532	31
GCGAACG	20	0.0069598267	52.482826	14
TATGCGC	20	0.0069598267	52.482826	3