SRR1781376_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781376_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	495270
Sequences flagged as poor quality	0
Sequence length	76
%GC	92

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	374623	75.64015587457347	No Hit
CTTATACACATCTGACGCTGCCGACGAGCTCTTGAGTGTAGATCTCGGTG	10824	2.185474589617784	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCTCTTGAGTGTAGATCTCGGT	1107	0.2235144466654552	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	918	0.18535344357623115	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	684	0.13810648737052517	No Hit
GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	627	0.1265976134229814	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	616	0.12437660266117471	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	516	0.10418559573565934	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	503	0.10156076483534235	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAATTG	15	0.0022209596	70.02537	43
TAATTGC	15	0.0022209596	70.02537	44
TGCGTCT	15	0.0022209596	70.02537	41
TATCAGT	20	7.913914E-5	70.018295	58
CGTATAA	20	7.913914E-5	70.018295	56
GCAAATT	20	7.913914E-5	70.018295	69
CTACGCA	15	0.00222185	70.018295	61
GTATCAG	20	7.913914E-5	70.018295	57
CGTGTCA	15	0.00222185	70.018295	56
CTCTACG	15	0.00222185	70.018295	59
TGTTCGA	15	0.0022227406	70.01122	32
AGTTCGT	15	0.0022254142	69.990005	29
GAGTTCG	15	0.0022254142	69.990005	28
CTTGTAC	15	0.002226306	69.98293	1
TGATTCT	15	0.002226306	69.98293	24
GGAGTTC	15	0.002226306	69.98293	27
CCAATGT	20	7.93771E-5	69.97587	16
CAATTGC	15	0.0022271979	69.97587	16
GAATAGG	15	0.0022271979	69.97587	15
CCCAATG	20	7.93771E-5	69.97587	15