SRR1781375_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781375_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	580408
Sequences flagged as poor quality	0
Sequence length	76
%GC	92

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	444211	76.53426555112955	No Hit
CTTATACACATCTGACGCTGCCGACGAGCTCTTGAGTGTAGATCTCGGTG	14128	2.4341497705062647	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCTCTTGAGTGTAGATCTCGGT	1483	0.2555099171617207	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1189	0.20485589447423194	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	879	0.15144519027994102	No Hit
GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	829	0.1428305605711844	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	801	0.13800636793428073	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	714	0.12301691224104423	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCTCTTGAGTGTAGATCTCGG	666	0.11474686772063789	No Hit
GGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	587	0.10113575278080247	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTCGGT	20	7.898409E-5	70.048065	43
GTCAATG	15	0.002219059	70.04202	37
CCGTGTA	15	0.0022198185	70.03598	34
ACCTCCT	15	0.0022198185	70.03598	36
GAGCGTA	15	0.0022198185	70.03598	58
CCTGGTG	15	0.0022198185	70.03598	35
CGGTAGC	15	0.0022198185	70.03598	55
GACTCTT	15	0.0022198185	70.03598	45
TGGCGTA	15	0.0022205783	70.02994	68
AGCGTAG	15	0.002221338	70.023895	59
TAAACAG	15	0.002221338	70.023895	33
ATATGTT	20	7.911922E-5	70.023895	59
AGCCTGG	15	0.002221338	70.023895	33
TCGGTAA	15	0.002221338	70.023895	60
CAGTAAG	15	0.0022220982	70.01785	61
CGGTAAG	15	0.0022220982	70.01785	61
ATGTTGT	20	7.915303E-5	70.01785	61
ATGTAGC	15	0.0022251403	69.993706	29
CGTATAC	20	7.9356134E-5	69.98164	1
CGTGTGC	15	0.0022266628	69.981636	1