Basic Statistics
Measure | Value |
---|---|
Filename | SRR1781363_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1270139 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT | 273707 | 21.549373729961836 | No Hit |
TCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCG | 32904 | 2.590582605525852 | No Hit |
CTCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCC | 16079 | 1.2659244381914105 | No Hit |
CTAATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT | 6306 | 0.4964810938015446 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 5756 | 0.4531787465781304 | No Hit |
TCTTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCC | 5728 | 0.4509742634467566 | No Hit |
ATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGTCTT | 3408 | 0.2683170897043552 | No Hit |
CTTAAACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT | 3297 | 0.2595778887192662 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACAAAGAATTATCTCGTATGCCGT | 2945 | 0.2318643864962811 | No Hit |
CATATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT | 2205 | 0.17360304659568757 | No Hit |
CTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGTC | 1843 | 0.14510222896864045 | No Hit |
CTTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCG | 1835 | 0.14447237664539078 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACCAAGAATAATCTCGTATGCCGT | 1577 | 0.12415963922058926 | No Hit |
ATTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT | 1341 | 0.10557899568472426 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACCAAGAAATATCTCGTATGCCGT | 1282 | 0.10093383480075803 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGTACG | 15 | 0.0022249233 | 70.000275 | 29 |
AGGGGGG | 34540 | 0.0 | 67.36176 | 70 |
AAGGGGG | 40345 | 0.0 | 57.5827 | 69 |
CCGTCTT | 40520 | 0.0 | 55.9724 | 47 |
GCCGTCT | 40925 | 0.0 | 55.96575 | 46 |
TGCCGTC | 41135 | 0.0 | 55.90973 | 45 |
TATGCCG | 41325 | 0.0 | 55.881313 | 43 |
ATGCCGT | 41295 | 0.0 | 55.879543 | 44 |
CGTCTTC | 41005 | 0.0 | 55.81389 | 48 |
ATCTCGT | 41775 | 0.0 | 55.727726 | 37 |
TCTCGTA | 41720 | 0.0 | 55.725693 | 38 |
CTCGTAT | 41685 | 0.0 | 55.700935 | 39 |
TATCTCG | 41530 | 0.0 | 55.685696 | 36 |
GTATGCC | 41515 | 0.0 | 55.676144 | 42 |
TGCTTGA | 41040 | 0.0 | 55.5107 | 55 |
GTCTTCT | 41130 | 0.0 | 55.50813 | 49 |
TCGTATG | 42180 | 0.0 | 55.495274 | 40 |
CTTCTGC | 41165 | 0.0 | 55.469437 | 51 |
CTGCTTG | 40880 | 0.0 | 55.45818 | 54 |
TTCTGCT | 40810 | 0.0 | 55.39458 | 52 |