SRR1781349_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781349_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1301002
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCGT	325709	25.035242067268154	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCG	38619	2.9684043529525703	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCC	17457	1.3418119264997288	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGCCCAGCATCTCGTATGCCGT	13926	1.0704057334270047	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10079	0.7747105692381717	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCC	7135	0.5484234459285997	No Hit
ATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCGTCTT	3986	0.306379236926615	RNA PCR Primer, Index 43 (95% over 22bp)
CATATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCGT	3655	0.2809373083208173	No Hit
CTAATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCGT	3280	0.25211337107859944	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGACAAGCATCTCGTATGCCGT	2854	0.21936937837143985	No Hit
CTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCGTC	2681	0.20607193532369666	No Hit
CTTAAACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCGT	2320	0.17832409173852154	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTAAGCCGT	2306	0.17724799808147873	No Hit
CTTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCG	2152	0.1654109678540079	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGCCCAGCATCTCGTATGCCG	1764	0.1355878007873931	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTAGTATGCCGT	1660	0.127593962192218	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGACGT	1476	0.11345101698536973	No Hit
ATTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCGT	1365	0.10491913156167323	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	40995	0.0	67.323105	70
CGACATA	55	3.6379788E-11	57.267914	48
CCGTCTT	46675	0.0	56.010292	47
GCCGTCT	47020	0.0	56.008694	46
AAGGGGG	49295	0.0	55.96633	69
CGTCTTC	46350	0.0	55.897137	48
GTCTTCT	44865	0.0	55.843964	49
CTGCTTG	44740	0.0	55.837868	54
ATGCCGT	49555	0.0	55.806026	44
CTCGTAT	49540	0.0	55.796814	39
TGCCGTC	48830	0.0	55.796047	45
TTCTGCT	43525	0.0	55.7782	52
TATGCCG	49585	0.0	55.772263	43
TCTCGTA	50085	0.0	55.762657	38
TGCTTGA	45700	0.0	55.760036	55
ATCTCGT	50070	0.0	55.744408	37
CTTCTGC	44970	0.0	55.72136	51
GTATGCC	49745	0.0	55.656197	42
TCGTATG	49920	0.0	55.573254	40
TCTGCTT	44805	0.0	55.553764	53