SRR1781347_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781347_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	530595
Sequences flagged as poor quality	0
Sequence length	76
%GC	94

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	417638	78.71125811588877	No Hit
CTTATACACATCTGACGCTGCCGACGAAGATCTCTGTGTAGATCTCGGTG	3673	0.6922417286254111	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1137	0.21428773358211067	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	879	0.1656630763576739	No Hit
GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	696	0.13117349390778277	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	677	0.12759260829823124	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	653	0.12306938437037665	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	588	0.11081898623243717	No Hit
GGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	579	0.10912277725949171	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATTGTA	15	0.002217273	70.0554	43
AGGTTGG	15	0.002217273	70.0554	45
ACAGCTT	15	0.002217273	70.0554	44
CGATAAC	15	0.002217273	70.0554	37
CGACGTA	15	0.0022189335	70.042175	53
CCCCGAA	20	7.901073E-5	70.042175	53
CGTAGCA	45	5.456968E-12	70.035576	56
GACGTAT	15	0.0022197643	70.03557	54
CCTAAGC	15	0.0022197643	70.03557	34
CCGAATC	40	1.3460522E-10	70.03557	55
GCTACTA	15	0.0022197643	70.03557	52
TCCCCGA	20	7.904767E-5	70.03557	52
TAGTCTG	15	0.0022197643	70.03557	54
GCGTATC	20	7.904767E-5	70.03557	55
CCCGAAT	20	7.904767E-5	70.03557	54
GTAGCAG	20	7.9084624E-5	70.02896	57
GTATCGT	15	0.002220595	70.02896	57
GCAGTAA	15	0.0022214262	70.022354	60
TCGGTAG	20	7.9121586E-5	70.022354	60
CAGTAAA	45	5.456968E-12	70.015755	61