SRR1781344_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781344_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1291896
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGT	323513	25.041721624650904	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCG	41015	3.1747911596599105	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCC	19810	1.5334051657408956	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6719	0.52008830432171	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCC	6197	0.47968257506796214	No Hit
CATATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGT	4023	0.31140277545560946	No Hit
ATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGTCTT	3903	0.30211410206394324	RNA PCR Primer, Index 45 (95% over 23bp)
CTAATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGT	3810	0.2949153801854019	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGT	2647	0.20489265389783698	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGTCAATTATCTCGTATGCCGT	2466	0.19088223819874045	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGTCATTATCTCGTATGCCGTC	2259	0.17485927659811626	No Hit
CTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGTC	2219	0.17176305213422752	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGTCATATATCTCGTATGCCGT	1851	0.14327778706645117	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCG	1778	0.13762717741985425	No Hit
ATTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGT	1515	0.1172695015697858	No Hit
CCTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCG	1500	0.11610841739582753	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGTCATTAATCTCGTATGCCGT	1376	0.10651012155777244	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	39355	67.11101	70
TAACTCG	380	58.943657	36
CCGTCTA	390	58.32514	47
AAGGGGG	45575	57.805855	69
CGGTAAT	215	56.977562	28
GCCGTCT	47375	55.15742	46
TGCCGTC	47580	55.118366	45
CCGTCTT	47035	55.094845	47
TATGCCG	47815	55.059715	43
ATGCCGT	47780	55.00483	44
CTCGTAT	48190	54.99648	39
TCTCGTA	48220	54.957134	38
CGTCTTC	47470	54.951206	48
ATCTCGT	48215	54.948315	37
CTGCTTG	47290	54.930958	54
TGCTTGA	47550	54.863	55
GTATGCC	47995	54.86051	42
TATCTCG	48025	54.859634	36
GTCTTCT	47710	54.75546	49
GCTTGAA	48065	54.719326	56