SRR1781341_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781341_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1240802
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGT	307096	24.749798920375692	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCG	37709	3.039082786778229	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCC	18135	1.4615547041349062	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6240	0.5029005433582473	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCC	5622	0.45309404723719016	No Hit
CATATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGT	4124	0.33236567961689295	No Hit
CTAATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGT	3759	0.30294922155186726	No Hit
ATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGTCTT	3656	0.2946481388650244	Illumina PCR Primer Index 6 (95% over 21bp)
CTTAAACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGT	2515	0.20269148502339618	No Hit
CTTATACACATCTCCGAGCCCACGAGACACCGCCATATCTCGTATGCCGT	2395	0.19302032072804526	No Hit
CTTATACACATCTCCGAGCCCACGAGACAACGCCAAATCTCGTATGCCGT	2004	0.1615084437323602	No Hit
CTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGTC	1961	0.1580429431931928	No Hit
CTTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCG	1652	0.1331396951326642	No Hit
CTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTAAGCCGT	1488	0.11992243726235129	No Hit
ATTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGT	1483	0.11951947208337835	No Hit
CTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCAGT	1439	0.11597337850841632	No Hit
CTTATACACATCTCCGAGCCCACGAGACAACGCCATCTCGTATGCCGTCT	1372	0.11057364511017874	RNA PCR Primer, Index 41 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAAA	15	0.0022253932	69.99645	24
AGGGGGG	38555	0.0	67.16237	70
AAGCCGT	1025	0.0	58.387287	44
TAACTCG	475	0.0	58.207577	36
AAGGGGG	45045	0.0	57.384705	69
ACTCGTA	475	0.0	56.73397	38
TCTCGAA	610	0.0	56.22666	38
CCGTCTT	44450	0.0	56.05789	47
GCCGTCT	44850	0.0	56.051792	46
CTGCTTG	44230	0.0	56.020226	54
TATCTCG	46045	0.0	56.003242	36
TATCGTC	25	2.3917103E-4	55.997166	40
TGCTTGA	44510	0.0	55.98458	55
CGTCTTC	44840	0.0	55.944954	48
TCTGCTT	44060	0.0	55.902767	53
CTTCTGC	44330	0.0	55.90175	51
GTCTTCT	44370	0.0	55.882904	49
ATATCTC	46120	0.0	55.86664	35
TATGCCG	45540	0.0	55.84807	43
TTCTGCT	44010	0.0	55.831097	52