SRR1781340_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781340_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	546481
Sequences flagged as poor quality	0
Sequence length	76
%GC	95

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	437041	79.97368618488109	No Hit
CTTATACACATCTGACGCTGCCGACGAAGATCTCTGTGTAGATCTCGGTG	3960	0.7246363551523292	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1195	0.2186718293957155	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	949	0.17365654066655564	No Hit
GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	821	0.15023395140910661	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	743	0.13596081108034863	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	701	0.12827527398024818	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	692	0.12662837317308379	No Hit
GGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	581	0.10631659655138971	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGAGCTC	15	0.0022191363	70.04085	40
TTCACTC	15	0.0022191363	70.04085	42
TCACTCT	15	0.0022191363	70.04085	43
CACTCTG	15	0.0022199426	70.03444	44
GATGAAC	15	0.0022199426	70.03444	44
ATCAGGA	20	7.916377E-5	70.015205	59
TTACTGT	20	7.916377E-5	70.015205	53
TTGAGTT	20	7.916377E-5	70.015205	48
GTAGCAT	25	2.835337E-6	70.015205	57
TACTGTC	20	7.916377E-5	70.015205	54
CGTAGCA	20	7.916377E-5	70.015205	56
CGTGTGA	20	7.916377E-5	70.015205	56
GAGTTAC	20	7.916377E-5	70.015205	50
AGTTACT	20	7.916377E-5	70.015205	51
TCAGTAA	25	2.835337E-6	70.015205	60
CCTGGTC	15	0.002222363	70.0152	53
CGGTAAG	15	0.002222363	70.0152	61
GTGCAGT	20	7.9199686E-5	70.0088	33
TCTCTGA	15	0.0022239776	70.00238	31
AACCAAG	15	0.0022239776	70.00238	31