SRR1781338_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781338_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	993226
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT	165903	16.703449164641277	No Hit
CATATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT	42669	4.296001111529501	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCG	33453	3.3681156151772105	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCC	13372	1.346319971486852	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	5460	0.5497238292191304	No Hit
CTAATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT	4865	0.4898180273170457	No Hit
CAAATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT	4201	0.4229651660347192	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCC	3365	0.3387949973117901	No Hit
ATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGTCTT	1965	0.19784016930688483	RNA PCR Primer, Index 17 (95% over 22bp)
CACTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCC	1873	0.1885774234665625	No Hit
TCATATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCG	1368	0.1377330033647931	No Hit
CATAAACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT	1122	0.11296522644393119	No Hit
CTTATACACATCTCCGAGCCCACGAGACAAATACAGCTCTCGTATGCCGT	1119	0.11266318038392067	No Hit
CCTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCG	1092	0.10994476584382609	No Hit
CTTAAACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT	1084	0.10913930968379805	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	26700	67.45236	70
CATATAC	6300	62.452354	1
ATATACA	6890	59.133682	2
TCGTAAG	495	57.268448	40
ACTCGTA	445	56.62498	38
AAGGGGG	31820	56.444923	69
CCGTCTA	500	55.29586	47
AATGCCG	475	54.522232	43
ATGCCGA	465	54.1895	44
GATCTCG	32845	54.033104	36
GCCGTCT	32550	54.017467	46
ATCTCGT	32535	54.010098	37
TATGCCG	32825	54.002052	43
ATGCCGT	32845	53.990482	44
CCGTCTT	32115	53.98631	47
TGCCGTC	32735	53.94739	45
CTCGTAT	33060	53.82991	39
GTATGCC	32920	53.824955	42
CGTCTTC	32370	53.809692	48
TCTCGTA	33100	53.775436	38