SRR1781331_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781331_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	399473
Sequences flagged as poor quality	0
Sequence length	76
%GC	85

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	243969	61.07271329977245	No Hit
CTTATACACATCTGACGCTGCCGACGATTCTAAGTGTGTAGATCTCGGTG	3241	0.8113189126674393	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	727	0.18198977152398285	No Hit
GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	544	0.13617941638108208	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	501	0.12541523457154802	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	474	0.11865632971439873	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	444	0.11114643542867728	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	406	0.10163390266676346	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	130	0.0	64.59147	2
ATAGACA	30	8.39474E-6	58.30444	4
TGTGCGC	135	0.0	57.008785	3
CGTATCA	540	0.0	56.389194	56
AGATTCC	25	2.3920364E-4	55.98628	18
TACACGT	25	2.3935168E-4	55.979267	5
CGCGTCT	145	0.0	55.49669	7
CCGTATC	530	0.0	55.478947	55
GTATCAT	565	0.0	53.88735	57
GCCGTAT	560	0.0	53.75702	54
CGGTGGT	675	0.0	52.90905	46
CGCCGTA	570	0.0	52.82053	53
TCGCCGT	585	0.0	52.663044	52
GTCGGCT	20	0.0069313906	52.533176	37
GGTCGCC	600	0.0	52.51344	50
TAAGCGC	20	0.0069451425	52.506855	55
GTACGAC	20	0.0069451425	52.506855	32
CTATTGG	20	0.006952026	52.493706	29
GAGCATA	20	0.006952026	52.493706	31
CTCGTCA	20	0.0069554695	52.487133	23