SRR1781330_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781330_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	291573
Sequences flagged as poor quality	0
Sequence length	76
%GC	84

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	179071	61.415494575972396	No Hit
CTTATACACATCTGACGCTGCCGACGATTCTAAGTGTGTAGATCTCGGTG	1675	0.5744702012874991	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	352	0.12072448409146251	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	333	0.11420810568879836	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	306	0.1049479890113282	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACC	15	0.0022190423	70.0333	42
GGTGTAG	20	7.900067E-5	70.0333	35
TTCGATT	15	0.0022190423	70.0333	39
AAACCGA	15	0.0022205538	70.021286	58
AGGACGA	20	7.906788E-5	70.02128	55
GCGTATC	20	7.906788E-5	70.02128	55
GCGGTGT	15	0.002222066	70.00927	33
GCTTAGG	20	7.933719E-5	69.97324	1
CGTGTGC	20	7.933719E-5	69.97324	1
CACCGTT	15	0.0022266076	69.97324	21
TATGCGG	15	0.0022281231	69.96124	3
TATGCGC	15	0.0022281231	69.96124	3
AGCGGGT	15	0.0022281231	69.96124	7
ATGCGGG	15	0.0022281231	69.96124	4
GTAGATC	300	0.0	65.36441	38
CCGTATC	280	0.0	62.519005	55
GCCGTAT	280	0.0	62.519005	54
TGTGCGC	45	3.8562575E-10	62.187775	3
AGATCTC	310	0.0	62.12632	40
TGTAGAT	300	0.0	61.862747	37