SRR1781321_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781321_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1276799
Sequences flagged as poor quality	0
Sequence length	76
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGT	148028	11.593680759461748	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCG	24216	1.8966180267998332	No Hit
CATATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGT	16269	1.274202125784873	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCC	10751	0.8420276018386605	No Hit
CTAATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGT	6145	0.4812817052644935	No Hit
ACTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCG	3542	0.27741249797344764	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCC	3118	0.24420445191451434	No Hit
ATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGTCTT	2511	0.19666368786316404	RNA PCR Primer, Index 32 (95% over 21bp)
CAAATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGT	2214	0.1734023914492414	No Hit
CTTATACACATCTCCGAGCCCACGAGACCAATCTTATCTCGTATGCCGTC	1728	0.13533845186282256	No Hit
CTTATACACATCTCCGAGCCCACGAGACCAATCATAATCTCGTATGCCGT	1533	0.12006588351024712	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGT	1375	0.10769118710149367	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	22180	0.0	66.05415	70
TATCCCG	50	9.840733E-10	55.995113	43
AAGGGGG	27210	0.0	53.847702	69
CCGTCTT	27035	0.0	53.204163	47
TATGCCG	27705	0.0	53.117546	43
GCCGTCT	27460	0.0	53.107166	46
AATCTCG	27985	0.0	53.086304	36
TGCCGTC	27675	0.0	53.036022	45
CTCGTAT	27875	0.0	52.94426	39
ATCTCGT	27710	0.0	52.93114	37
CGTCTTC	27485	0.0	52.918797	48
ATGCCGT	27805	0.0	52.91392	44
TCTCGTA	27830	0.0	52.89154	38
GTATGCC	27885	0.0	52.824867	42
CTGCTTG	27250	0.0	52.797226	54
CATATAC	3970	0.0	52.736454	1
TGCTTGA	27465	0.0	52.676994	55
TAATCTC	27690	0.0	52.566994	35
CTTAATC	27185	0.0	52.552185	33
CCGCAAT	20	0.006954613	52.49542	54