SRR1781315_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781315_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1461495
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT	229676	15.715141002877193	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCG	36547	2.500658572215437	No Hit
CATATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT	26050	1.7824214246371013	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCC	16184	1.1073592451565009	No Hit
CTAATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT	9904	0.6776622567986891	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCC	5853	0.40048033007297323	No Hit
ACTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCG	5414	0.37044259474031727	No Hit
ATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGTCTT	4703	0.3217937796571319	No Hit
CAAATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT	3827	0.2618551551664563	No Hit
CTTATACACATCTCCGAGCCCACGAGACAAAGAATTATCTCGTATGCCGT	3154	0.21580641740135956	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT	2394	0.1638048710395862	No Hit
CTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGTC	1918	0.13123548147615968	No Hit
CTTATACACATCTCCGAGCCCACGAGACCAAGAATAATCTCGTATGCCGT	1686	0.11536132521835518	No Hit
TCATATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCG	1586	0.10851901648654289	No Hit
CTTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCG	1581	0.10817690104995227	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1500	0.10263463097718432	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	34495	66.531166	70
CGTCATA	75	55.993214	48
TATGACG	900	55.60437	43
CCGTCAT	1340	55.105263	47
TAACTCG	850	54.351933	36
AAGGGGG	42615	53.78016	69
ACTCGTA	805	53.47544	38
TGCCGTC	42925	53.098976	45
ATGCCGT	43130	53.098133	44
TATGCCG	43300	53.091717	43
CCGTCTT	41830	53.033253	47
CATATAC	5870	53.0022	1
GCCGTCT	42430	52.992634	46
TCTCGTA	44245	52.94217	38
ATCTCGT	44270	52.935986	37
CTCGTAT	44075	52.931973	39
CGTCTTC	42365	52.883945	48
GTATGCC	43555	52.863037	42
TCGTAAG	1040	52.83375	40
ATGACGT	935	52.77435	44