SRR1781299_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781299_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	337068
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	58784	17.43980443115336	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	7576	2.2476176913857144	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	6069	1.800526896649934	No Hit
CATATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	1294	0.3838987978686793	No Hit
CTAATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	1164	0.34533091245683367	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1132	0.335837279124687	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	1057	0.31358657600246836	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	931	0.27620539475714095	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGACGT	816	0.24208764996973905	No Hit
ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT	783	0.23229734059596283	Illumina PCR Primer Index 9 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCAGT	685	0.2032230885162638	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGCTCTCGTATGCCGT	644	0.19105937080945093	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATATCGTATGCCGT	594	0.1762255687279718	No Hit
CTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC	517	0.15338151352249396	No Hit
CTTATACACATCTCCGCGCCCACGAGACGTTAACAGATCTCGTATGCCGT	463	0.13736100727449654	No Hit
CTTATACACATCTCCGAGCCCACGAGACGATAACAGATCTCGTATGCCGT	376	0.1115501916527229	No Hit
CTTATACACATCTCCGAGACCACGAGACGTTAACAGATCTCGTATGCCGT	347	0.102946586445465	No Hit
CTTATACACATCTCCGAGCCAACGAGACGTTAACAGATCTCGTATGCCGT	340	0.10086985415405794	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGTAT	75	0.0	70.0597	46
TATTGTA	15	0.0022251818	69.986946	10
AGGGGGG	5865	0.0	64.37844	70
CCGTATT	90	0.0	62.275284	47
CACGTAT	85	0.0	61.75319	39
ATTCCGT	30	8.339786E-6	58.365746	44
TCGTATC	30	8.376555E-6	58.322456	40
CGTTAAA	115	0.0	57.815304	28
AGCTAGA	85	0.0	57.67053	55
ACGTATG	105	0.0	56.6561	40
TAAGACG	25	2.382056E-4	56.031113	43
CTCGAAA	50	9.804353E-10	55.989555	39
TGCCGTA	115	0.0	54.821182	45
TCTTTAT	205	0.0	54.62396	1
TCGTATT	45	2.699926E-8	54.43429	40
GTATTCT	105	0.0	53.355045	49
GACGATA	315	0.0	53.32339	26
TCGAATG	185	0.0	52.963097	40
TCGAAAG	60	8.367351E-11	52.49021	40
CTATCGA	20	0.0069529233	52.490208	37