SRR1781298_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781298_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	320205
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	56746	17.721771989819022	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	7253	2.265111413001046	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	5850	1.8269546072047596	No Hit
CATATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	1132	0.35352352399244236	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	964	0.30105713527271594	No Hit
CTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	961	0.30012023547414934	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	940	0.2935619368841835	No Hit
CTTAAACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	827	0.2582720444715104	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT	743	0.2320388501116472	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	697	0.21767305320029356	RNA PCR Primer, Index 42 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGACGT	609	0.1901906591090083	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGCTCTCGTATGCCGT	543	0.16957886354054436	No Hit
CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	530	0.16551896441342265	RNA PCR Primer, Index 32 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCAGT	519	0.16208366515201197	No Hit
CTTATACACATCTCCGCGCCCACGAGACATCACTCGATCTCGTATGCCGT	366	0.11430177542511828	No Hit
CTTATACACATCTCCGAGACCACGAGACATCACTCGATCTCGTATGCCGT	328	0.10243437797660873	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGGTAA	15	0.0022263678	69.97674	24
AGGGGGG	5320	0.0	65.96491	70
TAACTCG	70	0.0	64.99869	30
CATAACT	85	0.0	61.763462	28
ACGTATG	90	0.0	58.359512	40
AATGCCG	105	0.0	56.727554	43
CACGTAT	75	0.0	56.025127	39
TAACGTA	25	2.3868165E-4	56.00762	38
ACTTCGT	20	0.0069308747	52.53177	54
AATCGAT	60	8.367351E-11	52.498947	32
TACGAGA	20	0.0069566187	52.48255	13
TTTTCGA	20	0.0069566187	52.48255	22
GCTTGAA	9575	0.0	52.286827	56
ATCTCGT	9385	0.0	52.284515	37
CGTATGA	275	0.0	52.229717	41
TATGCCG	9440	0.0	52.148136	43
CTTGAAA	9610	0.0	52.116543	57
CGTATGC	9605	0.0	52.083164	41
TCGTATG	9785	0.0	52.031513	40
CTCGTAT	9595	0.0	52.00352	39