SRR1781294_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781294_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	482544
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	67702	14.030223150634969	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	8778	1.8191087237640506	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	7294	1.5115720017241951	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2627	0.5444063132066713	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGACGT	1725	0.3574803541231473	No Hit
CATATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	1286	0.26650419443615503	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	1214	0.2515832753075367	No Hit
CTAATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	1209	0.25054710036804934	No Hit
CTTAAACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	1065	0.22070526211081268	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCAGT	914	0.1894127789382937	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	812	0.1682748101727511	Illumina PCR Primer Index 10 (95% over 23bp)
CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	624	0.12931463244802546	Illumina PCR Primer Index 10 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTAGTATGCCGT	604	0.12516993269007592	No Hit
CTTATACACATCTCCGCGCCCACGAGACAGTAGATTATCTCGTATGCCGT	543	0.11252859842832985	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	6180	0.0	63.811085	70
TAACTCG	125	0.0	61.58477	36
GACGTAT	35	2.9476723E-7	60.072323	46
TATGACG	605	0.0	55.007793	43
ATATCGT	160	0.0	54.67398	37
AATCTCG	265	0.0	54.137554	36
ATGACGT	630	0.0	53.942646	44
TGACGTA	65	3.6379788E-12	53.911057	45
TAAGCCG	260	0.0	53.89427	43
ACGTATG	130	0.0	53.83842	40
GTATGAC	625	0.0	53.808044	42
AAGCCGT	280	0.0	53.80362	44
CGTATGA	575	0.0	53.58529	41
TATGCCG	11185	0.0	52.71135	43
CTGCTTG	9965	0.0	52.709606	54
GTCTTCT	9945	0.0	52.569138	49
CCGTCTT	10150	0.0	52.546017	47
TGCTTGA	10280	0.0	52.54284	55
GCTTGAA	10985	0.0	52.51131	56
TAAAACG	20	0.006956402	52.487022	36