SRR1781279_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781279_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	207977
Sequences flagged as poor quality	0
Sequence length	76
%GC	71

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	51122	24.580602662794444	No Hit
CTTATACACATCTGACGCTGCCGACGAGGGCCGGTGTGTAGATCTCGGTG	2433	1.169840895868293	No Hit
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	585	0.2812811031989114	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	481	0.23127557374132715	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	282	0.13559191641383422	No Hit
TCTTATACACATCTGACGCTGCCGACGAGGGCCGGTGTGTAGATCTCGGT	223	0.10722339489462777	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	40	7.454473E-7	52.5	2
CATTGAT	20	0.006944072	52.5	42
GATTTGC	20	0.006944072	52.5	64
CCATGTA	20	0.006944072	52.5	5
GTAATGG	20	0.006944072	52.5	62
TGCGTGA	20	0.006944072	52.5	41
GCCGTAT	480	0.0	47.395832	54
CGTATCA	490	0.0	47.142857	56
TCATTAA	500	0.0	46.899998	60
TCTCGGT	495	0.0	46.666664	43
GTATCAT	510	0.0	46.666664	57
TATCATT	500	0.0	46.2	58
CCGTATC	485	0.0	46.185566	55
ATCTCGG	520	0.0	45.096153	42
ATCATTA	520	0.0	45.096153	59
CATTAAA	525	0.0	44.666668	61
AGATCTC	535	0.0	44.48598	40
TGGTCGC	535	0.0	44.48598	49
TAGATCT	540	0.0	44.074074	39
CGCGTGT	40	4.581771E-5	43.75	7