SRR1781274_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781274_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	367825
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	22889	6.222796166655339	No Hit
CATATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	17917	4.871066403860532	No Hit
CAAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	6550	1.7807381227485894	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	5475	1.4884795758852716	No Hit
CTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	4881	1.3269897369673078	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	4242	1.1532658193434377	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	3295	0.895806429688031	No Hit
CACTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	1967	0.5347651736559506	No Hit
TCATATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	1815	0.4934411744715558	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	775	0.2106980221572759	No Hit
CATATAAACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	479	0.13022497111398085	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	469	0.12750628695711275	RNA PCR Primer, Index 42 (95% over 22bp)
CATATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT	443	0.12043770814925576	No Hit
CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	383	0.1041256032080473	RNA PCR Primer, Index 32 (95% over 21bp)

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAA	35	3.7089194E-9	69.99021	39
CAAATAC	1265	0.0	64.17202	1
AGGGGGG	4570	0.0	63.08982	70
AAATACA	1370	0.0	60.786156	2
CATATAC	3055	0.0	57.267345	1
AATACAC	2410	0.0	57.204136	3
ATATACA	3100	0.0	57.00041	2
TCGATAT	470	0.0	56.580135	34
CTCGATA	470	0.0	56.580135	33
TCGTATC	25	2.3873331E-4	56.0074	40
CGATATC	490	0.0	55.706497	35
GATATCG	510	0.0	55.58046	36
ATATCGT	485	0.0	55.55924	37
ATCGTAT	460	0.0	55.53571	39
TATCGTA	490	0.0	54.992313	38
AGTCTTC	305	0.0	54.000305	48
TCGAATG	190	0.0	53.428112	40
CAGTCTT	285	0.0	52.871517	47
TATCGGT	20	0.006933467	52.528366	49
ATCTCGT	9150	0.0	52.511784	37