SRR1781273_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781273_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	324148
Sequences flagged as poor quality	0
Sequence length	76
%GC	75

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	117919	36.378135913224824	No Hit
CTTATACACATCTGACGCTGCCGACGATAAACTGGGTGTAGATCTCGGTG	3621	1.1170823204215359	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1221	0.3766797882448758	No Hit
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1153	0.3557017164998704	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	596	0.1838666288238706	No Hit
GGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	418	0.12895344102076828	No Hit
GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	417	0.1286449399656947	No Hit
GGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	373	0.11507089354245591	No Hit
TCTTATACACATCTGACGCTGCCGACGATAAACTGGGTGTAGATCTCGGT	350	0.10797536927576291	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGTGC	15	0.0022234593	70.0	23
CGGCAAT	15	0.0022234593	70.0	63
TGTAGGT	35	2.9692637E-7	60.000004	37
CTTGTGC	65	0.0	59.230766	1
CTGGTGT	25	2.388468E-4	55.999996	6
GCCGTAT	645	0.0	54.26356	54
CGCGTCT	110	0.0	54.09091	7
CGTATCA	660	0.0	54.090904	56
CCGTATC	660	0.0	53.0303	55
TTGTGCG	120	0.0	52.5	2
TAGAACG	20	0.0069475565	52.5	4
TACACTG	20	0.0069475565	52.5	34
GCGTACT	20	0.0069475565	52.5	2
TCTCGGT	705	0.0	52.12766	43
GTATCAT	700	0.0	51.000004	57
ATCATTA	695	0.0	50.863308	59
CGCCGTA	685	0.0	50.58394	53
TATCATT	700	0.0	50.500004	58
TCATTAA	700	0.0	50.500004	60
TCGGTGG	795	0.0	49.74843	45