SRR1781270_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781270_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	448307
Sequences flagged as poor quality	0
Sequence length	76
%GC	67

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	107658	24.014347311106004	No Hit
CTTATACACATCTGACGCTGCCGACGATAAACTGGGTGTAGATCTCGGTG	5014	1.1184300044389224	No Hit
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1125	0.2509441074977638	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1038	0.23153776318460342	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	569	0.12692195303664675	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTATC	20	7.924227E-5	69.998436	55
CGTATCA	810	0.0	57.035763	56
GCCGTAT	810	0.0	57.035763	54
GTATCAT	865	0.0	55.03381	57
ATCTCGG	865	0.0	54.62306	42
CCGTATC	835	0.0	54.489803	55
TCTCGGT	875	0.0	54.398785	43
CGCCGTA	855	0.0	53.62454	53
TGGTCGC	880	0.0	52.896545	49
GTAGATC	935	0.0	52.779575	38
GACGTAT	20	0.006949899	52.498825	54
GATCTCG	930	0.0	52.310665	41
TAGATCT	920	0.0	52.118404	39
AGATCTC	930	0.0	51.934326	40
TCATTAA	880	0.0	51.709156	60
ATCATTA	890	0.0	51.128155	59
CATTAAA	905	0.0	50.6675	61
TCGCCGT	900	0.0	50.16555	52
TATCATT	900	0.0	49.782223	58
TCGGTGG	995	0.0	49.596886	45