SRR1781260_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781260_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	284030
Sequences flagged as poor quality	0
Sequence length	76
%GC	73

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	84447	29.731718480442204	No Hit
CTTATACACATCTGACGCTGCCGACGATTGGTACGGTGTAGATCTCGGTG	1289	0.4538253001443509	No Hit
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	990	0.34855473013414073	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	664	0.2337781220293631	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	408	0.14364679787346407	No Hit
GGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	360	0.12674717459423301	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	20	0.006942323	52.50832	1
TTACGAC	20	0.006942323	52.50832	3
CTTAGGG	20	0.006942323	52.50832	3
GCGATAT	20	0.0069471593	52.499077	20
GCCGTAT	275	0.0	47.09008	54
TAAGTTA	30	5.8723975E-4	46.665848	29
TTTGCCC	30	5.8723975E-4	46.665848	35
CGTATCA	285	0.0	45.437798	56
TCTCGGT	285	0.0	45.437798	43
ATCATTA	285	0.0	45.437798	59
TATCATT	280	0.0	44.999207	58
CATTAAA	275	0.0	44.54467	61
TCATTAA	290	0.0	43.447514	60
CCGTATC	290	0.0	43.447514	55
AGATCTC	305	0.0	42.458267	40
TAGATCT	305	0.0	42.458267	39
GTATCAT	310	0.0	41.77346	57
CGCCGTA	295	0.0	41.524693	53
TCGGTGG	340	0.0	40.14635	45
GTTCTTA	35	0.001253196	40.00634	2