SRR1781238_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781238_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	223871
Sequences flagged as poor quality	0
Sequence length	76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	39586	17.682504656699617	No Hit
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	524	0.23406336684965895	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	269	0.12015848412701957	No Hit
CTTATACACATCTGACGCTGCCGACGAGAATGATCGTGTAGATCTCGGTG	242	0.10809796713285777	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGTAT	50	9.767973E-10	55.999996	54
TTGTACG	20	0.0069447635	52.5	4
ATAGACT	20	0.0069447635	52.5	4
CAAGCCG	20	0.0069447635	52.5	21
TATACGC	20	0.0069447635	52.5	3
TAATGTA	20	0.0069447635	52.5	36
ATCGCTA	20	0.0069447635	52.5	48
CGTATCA	55	2.2719178E-9	50.909096	56
CCGTATC	60	4.9094524E-9	46.666668	55
CCTATCC	30	5.869206E-4	46.666668	9
TACTTGA	35	0.0012536041	40.0	1
CGCCGTA	80	1.4151738E-9	39.375	53
ATCTAGG	40	0.0024152882	35.0	2
TGTGCGC	40	0.0024152882	35.0	3
AGACCTA	50	1.7060955E-4	35.0	5
GCTCGAA	40	0.0024152882	35.0	2
TGCGTCA	40	0.0024152882	35.0	31
TCTCGGT	95	7.587005E-9	33.157898	43
TGGTCGC	95	7.587005E-9	33.157898	49
CTATGTG	45	0.0043011247	31.111113	9