SRR1781238_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781238_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	223871
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	19512	8.715733614447606	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	4375	1.954250438868813	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	1934	0.8638903654336649	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	710	0.3171469283649959	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	582	0.2599711440963769	RNA PCR Primer, Index 42 (95% over 22bp)
CTTATAAACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	499	0.22289622148469435	No Hit
CTTAAACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	495	0.22110947822629998	No Hit
ATTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	472	0.21083570449053252	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	448	0.20011524494016641	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGACGT	340	0.15187317696351918	No Hit
CATATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	329	0.14695963300293471	No Hit
CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	317	0.1415994032277517	RNA PCR Primer, Index 32 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACATAACTCGATCTCGTATGCCGT	300	0.13400574437957571	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT	289	0.12909220041899128	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCAGT	243	0.10854465294745635	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTGTAC	15	0.002223655	69.991295	34
AAACGCG	15	0.002223655	69.991295	69
CGTCTTA	60	0.0	64.201706	48
ATCGATC	60	0.0	64.15868	33
GCCGTAT	30	8.331142E-6	58.36519	46
AGGGGGG	1670	0.0	56.789337	70
TCGATAT	185	0.0	56.74969	34
ATATCGT	165	0.0	55.14465	37
CTCGATA	180	0.0	54.43767	33
CAATCGA	85	0.0	53.522747	31
TATCGTA	170	0.0	53.522747	38
AATCGAT	85	0.0	53.522747	32
TATGACG	220	0.0	52.516926	43
AAGCGGG	20	0.006948181	52.493465	70
TAAGCCG	75	0.0	51.349884	43
TCGATCA	55	2.2755557E-9	50.902756	34
CGTATGA	255	0.0	50.789337	41
ATGACGA	50	6.155824E-8	49.015797	44
ATCGTAT	225	0.0	48.216225	39
GATATCG	205	0.0	47.79893	36