SRR1781233_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781233_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	251632
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	26079	10.363944172442297	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	4438	1.7636866535257836	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	2704	1.0745851084122846	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	792	0.3147453424047816	No Hit
CTTATAAACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	689	0.2738125516627456	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGACGT	672	0.2670566541616329	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	647	0.25712151077764356	RNA PCR Primer, Index 24 (95% over 23bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	625	0.24837858459973294	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	617	0.24519933871685637	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	553	0.2197653716538437	No Hit
CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	443	0.17605074076429073	No Hit
CATATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	401	0.15935969987918866	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCAGT	379	0.15061677370127804	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGAATCTCGTATGCCGT	284	0.11286322884211865	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	260	0.10332549119348891	RNA PCR Primer, Index 24 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCTT	15	0.0022247075	69.9855	21
CGTATAG	15	0.0022247075	69.9855	33
AACTCGA	20	7.9247344E-5	69.9855	37
ACGACTT	45	3.8016879E-10	62.271202	47
AGGGGGG	2290	0.0	60.20586	70
TCGAAAG	35	2.9667353E-7	59.999485	40
ATATCGA	30	8.3714385E-6	58.321247	37
GCCGTAT	75	0.0	56.044083	46
TCGAATG	115	0.0	54.78214	40
CGTCTTA	175	0.0	54.042507	48
AAATCCG	20	0.006951453	52.48912	10
ATGCGTG	20	0.006951453	52.48912	3
CGAATGC	115	0.0	51.779858	41
CCGTCTT	4575	0.0	51.06749	47
TGCCGTA	110	0.0	50.949165	45
GCCGTCT	4700	0.0	50.45458	46
CTTGAAA	5010	0.0	50.318977	57
TATGCCG	5070	0.0	50.226883	43
GCTTGAA	4950	0.0	50.221558	56
GTATGCC	5085	0.0	50.147606	42