SRR1781229_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781229_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	150878
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	6142	4.070838690862817	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	2250	1.4912710932011293	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	1671	1.1075173318840388	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	751	0.49775315155291033	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	716	0.4745556012142261	No Hit
CTAATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	469	0.31084717453836874	No Hit
CTAAAACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	323	0.2140802502684288	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	311	0.20612680443802275	No Hit
TCATATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	305	0.20215008152281977	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTAAT	15	0.002218521	70.02089	47
TCGAAAG	15	0.0022214411	69.99768	40
CGAATGC	50	1.4551915E-11	62.997913	41
AGGGGGG	755	0.0	59.33579	70
CGAAACT	30	8.346638E-6	58.3314	34
CGTAATC	25	2.3808461E-4	56.01671	48
CTTTATA	65	3.6379788E-12	53.844368	2
TCGAATG	65	3.6379788E-12	53.844368	40
CTTAAAC	395	0.0	53.162796	1
AACACAT	670	0.0	52.759445	5
TTGGACC	20	0.006932205	52.515667	46
CCGTCTA	60	8.367351E-11	52.515667	47
TAAGCCG	80	0.0	52.49826	43
TCGTAAG	95	0.0	51.57724	40
AACGTAT	75	0.0	51.331635	32
ACGTAAC	75	0.0	51.331635	33
TTAAACA	440	0.0	50.907406	2
TAAACAC	470	0.0	49.89196	3
AAAACAC	310	0.0	49.67577	3
AAACACA	750	0.0	49.465027	4