SRR1781228_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781228_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	253553
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	12907	5.090454461197462	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	3491	1.3768324571194188	No Hit
CTTAAACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	3159	1.2458933635176865	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	1347	0.5312498767516062	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1256	0.49535994446920373	No Hit
CTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	875	0.3450955027154086	No Hit
CTAAAACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	595	0.23466494184647785	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	493	0.19443666610136737	No Hit
TCATATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	378	0.14908125717305654	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGAAGATCTCGTATGCCGT	266	0.10490903282548422	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGTAA	25	2.8158156E-6	70.07839	46
ACTATCG	20	7.927002E-5	69.98167	27
TACGATA	15	0.0022252107	69.98166	10
AGGGGGG	1385	0.0	59.876003	70
CTTAAAC	570	0.0	56.476425	1
GTAGACT	25	2.3905652E-4	55.98533	3
ACTCGTA	125	0.0	55.98533	38
CCGTAAT	45	2.6686394E-8	54.50542	47
AACACAT	965	0.0	54.389893	5
TTAAACA	650	0.0	54.37037	2
AAACACA	1065	0.0	53.22549	4
TAAGCCG	60	8.367351E-11	52.54842	43
CGTAAGC	80	0.0	52.538048	41
ACGTATG	60	8.367351E-11	52.496597	40
ATTCGAG	20	0.0069530206	52.486248	5
CGTAGAA	20	0.0069530206	52.486248	32
GTAAACG	20	0.0069530206	52.486248	25
TAAACAC	735	0.0	52.367226	3
AACTCGT	130	0.0	51.14045	37
CCGTCTT	3055	0.0	49.77745	47