SRR1781226_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781226_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	171644
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	13706	7.985132017431427	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	4045	2.3566218452145136	No Hit
CTTAAACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	3461	2.016382745682925	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	1526	0.8890494278856237	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1459	0.8500151476311436	No Hit
CTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	920	0.5359931020018177	No Hit
CTAAAACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	696	0.4054904336883317	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	515	0.3000396168814523	No Hit
TCATATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	469	0.2732399617813614	No Hit
ATACCCATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	256	0.14914590664398406	RNA PCR Primer, Index 42 (95% over 22bp)
CTCTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	206	0.12001584675258092	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAACTCGATCTCGTATGCCGT	187	0.10894642399384774	No Hit
CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	179	0.10428561441122323	RNA PCR Primer, Index 32 (95% over 21bp)
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	176	0.10253781081773904	RNA PCR Primer, Index 42 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGCTT	15	0.0022161708	70.04375	45
TGCCGTA	15	0.0022161708	70.04375	45
CGTATAC	15	0.002218736	70.02332	41
TTGAGCG	15	0.0022238733	69.98252	16
CGAAAAT	20	7.9192316E-5	69.98251	26
CTAGATC	45	3.8380676E-10	62.20668	33
ACTAGAT	40	1.0621079E-8	61.234703	32
AACTCGT	115	0.0	60.872097	37
AACACAT	970	0.0	60.242687	5
AGGGGGG	1435	0.0	59.985016	70
CTCGTAA	95	0.0	58.949825	39
CTTAAAC	625	0.0	58.802444	1
AAACACA	1025	0.0	58.375664	4
ACTCGTA	120	0.0	58.335762	38
ATCGATC	30	8.362247E-6	58.318768	33
TTAAACA	670	0.0	57.970592	2
TAAACAC	715	0.0	56.76904	3
TCGTAAG	105	0.0	56.66902	40
GTAAGAC	25	2.3813633E-4	56.018654	42
TAAGACG	25	2.3813633E-4	56.018654	43