SRR1781221_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781221_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	223059
Sequences flagged as poor quality	0
Sequence length	76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	11667	5.230454722741517	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	3222	1.44446088254677	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	2639	1.1830950555682578	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1061	0.47565890638799596	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	914	0.4097570597913556	No Hit
CTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	773	0.3465450844843741	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	487	0.21832788634397177	No Hit
CTAAAACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	474	0.21249983188304442	No Hit
TCATATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	341	0.15287435162894122	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGACGT	236	0.1058016040599124	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTAT	15	0.0022141999	70.06643	46
AAATCCG	20	7.92142E-5	69.98789	10
TTAATAC	35	2.9685725E-7	59.989624	3
AACACAT	925	0.0	57.503567	5
AGGGGGG	1355	0.0	56.558483	70
CTTAAAC	530	0.0	56.122364	1
TCGTATC	25	2.3888872E-4	55.990314	40
AACTATT	25	2.3888872E-4	55.990314	19
AAACACA	1030	0.0	55.378773	4
CTAAAAC	325	0.0	53.83684	1
AAAACAC	455	0.0	53.06775	3
TTAAACA	620	0.0	53.05534	2
ATATGTC	20	0.0069187214	52.54982	48
TAGAGTA	20	0.006949482	52.49092	32
TCCGATG	20	0.006949482	52.49092	3
GTAATGC	20	0.006949482	52.49092	24
TCGTAAT	20	0.006949482	52.49092	40
CACGTAT	40	7.465842E-7	52.49092	39
CGTAAGC	135	0.0	51.86614	41
TAAACAC	660	0.0	51.4305	3