SRR1781220_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781220_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	202275
Sequences flagged as poor quality	0
Sequence length	76
%GC	72

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	50190	24.812754912866147	No Hit
CTTATACACATCTGACGCTGCCGACGATCCGTGCCGTGTAGATCTCGGTG	1294	0.6397231491780991	No Hit
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	614	0.303547151155605	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	372	0.1839080459770115	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	258	0.12754912866147572	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTATC	220	0.0	55.68182	55
CGTATCA	220	0.0	54.09091	56
TATACCC	20	0.006943799	52.5	4
TAACTCT	20	0.006943799	52.5	70
GCCGTAT	230	0.0	51.73913	54
ATCATTA	220	0.0	50.909096	59
TCATTAA	220	0.0	49.318184	60
GTATCAT	235	0.0	49.148937	57
TATCATT	255	0.0	46.666668	58
TAGATCT	245	0.0	45.714287	39
CATTAAA	235	0.0	44.68085	61
GTAGATC	255	0.0	43.92157	38
ATTAAAA	245	0.0	42.857143	62
AGATCTC	260	0.0	41.73077	40
TGTAGAT	260	0.0	41.73077	37
CGCCGTA	300	0.0	40.833332	53
ATCTCGG	275	0.0	40.727272	42
TCGGTGG	275	0.0	40.727272	45
TCTCGGT	265	0.0	39.62264	43
CGCGTCT	45	9.1750284E-5	38.88889	7