SRR1781219_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781219_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	324021
Sequences flagged as poor quality	0
Sequence length	76
%GC	67

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	61132	18.8666783943016	No Hit
CTTATACACATCTGACGCTGCCGACGATCCGTGCCGTGTAGATCTCGGTG	1162	0.35861873150197054	No Hit
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	661	0.20399912351359942	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	530	0.16356964517731876	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	334	0.1030797386589141	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAATACG	20	0.0069479775	52.49919	25
GTTCGTT	20	0.0069479775	52.49919	21
CCGTATC	245	0.0	48.570675	55
CGTATCA	255	0.0	48.038475	56
GCCGTAT	255	0.0	48.038475	54
GTATCAT	265	0.0	44.90497	57
TCATTAA	265	0.0	42.2635	60
TTGTGCG	50	3.4698096E-6	42.005833	2
TAGATCT	310	0.0	41.77355	39
TATCATT	270	0.0	41.48084	58
CGCCGTA	305	0.0	40.16332	53
ATCATTA	295	0.0	37.965515	59
CATTAAA	305	0.0	36.72075	61
AGATCTC	345	0.0	36.521175	40
GTAGATC	370	0.0	35.945393	38
TCTCGGT	345	0.0	35.5067	43
TGTGCGC	80	6.2198524E-8	35.004864	3
GGCATAG	40	0.0024152314	35.004864	1
TCGGTGG	400	0.0	34.124474	45
TGTAGAT	415	0.0	32.89106	37