##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781218_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 278821 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.24693620638331 34.0 34.0 34.0 32.0 34.0 2 33.28152470581484 34.0 34.0 34.0 33.0 34.0 3 33.32124194375603 34.0 34.0 34.0 33.0 34.0 4 33.362917427309995 34.0 34.0 34.0 33.0 34.0 5 33.396110766405684 34.0 34.0 34.0 33.0 34.0 6 36.815404865487174 38.0 37.0 38.0 34.0 38.0 7 36.709010440390074 38.0 37.0 38.0 34.0 38.0 8 36.49146943738097 38.0 37.0 38.0 34.0 38.0 9 36.43780059608136 38.0 37.0 38.0 34.0 38.0 10-11 36.35182428870135 38.0 37.0 38.0 34.0 38.0 12-13 36.29042109453735 38.0 37.0 38.0 34.0 38.0 14-15 36.2990484934779 38.0 37.0 38.0 34.0 38.0 16-17 36.23137425086345 38.0 37.0 38.0 34.0 38.0 18-19 36.233201588115676 38.0 37.0 38.0 34.0 38.0 20-21 36.174954540726844 38.0 37.0 38.0 33.5 38.0 22-23 36.23253628672158 38.0 37.0 38.0 34.0 38.0 24-25 36.232290609387384 38.0 37.0 38.0 34.0 38.0 26-27 36.00602178458581 38.0 36.5 38.0 32.0 38.0 28-29 36.00619214478106 38.0 37.0 38.0 32.0 38.0 30-31 36.03933168592036 38.0 37.0 38.0 32.0 38.0 32-33 35.98980887379358 38.0 37.0 38.0 32.0 38.0 34-35 35.97986163165615 38.0 37.0 38.0 32.0 38.0 36-37 35.90884115615395 38.0 36.5 38.0 31.5 38.0 38-39 35.74570423318187 38.0 36.0 38.0 31.0 38.0 40-41 35.86533474881735 38.0 36.0 38.0 31.5 38.0 42-43 35.921704247527984 38.0 36.5 38.0 32.0 38.0 44-45 35.88186148102187 38.0 36.0 38.0 31.5 38.0 46-47 35.90026576190459 38.0 36.5 38.0 32.0 38.0 48-49 35.877708278788184 38.0 36.0 38.0 31.5 38.0 50-51 35.78693857349339 38.0 36.0 38.0 31.0 38.0 52-53 35.814289454524584 38.0 36.0 38.0 31.0 38.0 54-55 35.83435609225991 38.0 36.0 38.0 31.5 38.0 56-57 35.77463856739628 38.0 36.0 38.0 31.0 38.0 58-59 35.76250533496401 38.0 36.0 38.0 31.0 38.0 60-61 35.75072537577873 38.0 36.0 38.0 31.0 38.0 62-63 35.73905121924102 38.0 36.0 38.0 31.0 38.0 64-65 35.692471155329045 38.0 36.0 38.0 31.0 38.0 66-67 35.64221310446487 38.0 36.0 38.0 31.0 38.0 68-69 35.54413942995686 38.0 36.0 38.0 31.0 38.0 70-71 35.40942934714387 38.0 36.0 38.0 30.0 38.0 72-73 35.28634141617741 38.0 36.0 38.0 29.0 38.0 74-75 35.30391541526643 38.0 36.0 38.0 29.0 38.0 76 34.373182077390155 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 4.0 21 12.0 22 37.0 23 93.0 24 196.0 25 414.0 26 855.0 27 1433.0 28 2477.0 29 3992.0 30 6157.0 31 8791.0 32 12393.0 33 17271.0 34 23444.0 35 32247.0 36 47619.0 37 121386.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.44830554370008 18.265123502175232 10.239544367174638 28.047026586950054 2 23.664286405973726 19.796930647261146 31.409757514677878 25.129025432087253 3 19.96262835295763 21.89218172232364 29.091424247097603 29.053765677621122 4 14.033734905190068 17.8236216066939 35.743003575770835 32.399639912345194 5 13.698752963370763 33.96731236169442 36.173745879973175 16.16018879496164 6 30.007424117982506 38.25106430290401 17.054669483288563 14.68684209582492 7 29.22018068940288 28.435806485164317 21.185276575293827 21.15873625013898 8 25.782132622722102 35.35745155494027 18.511518142464162 20.348897679873467 9 24.44794330412702 15.950018111978654 19.74743652737778 39.85460205651655 10-11 25.233214140972166 24.897514893067594 26.877459014923556 22.991811951036688 12-13 24.898052872631546 22.673507375699824 26.225248456895283 26.203191294773347 14-15 23.03323637746081 23.283038221654753 22.77375090111577 30.909974499768666 16-17 24.97713586853214 26.969094867316308 24.036568264226872 24.017200999924682 18-19 24.441487549359625 25.735328400658485 25.023043457989175 24.80014059199271 20-21 22.924743832064298 25.764737950154398 24.900204790887344 26.410313426893957 22-23 23.442818152147794 26.453710445052558 25.430293987899045 24.6731774149006 24-25 24.319007535300425 26.59125388690235 25.217792060138944 23.871946517658284 26-27 23.509168965034917 27.19181840679145 25.502383249468295 23.796629378705333 28-29 23.125230882896194 26.655452781533672 26.140785665355192 24.07853067021494 30-31 22.8542685091869 27.905358635109984 25.65732136388579 23.58305149181733 32-33 22.479117426592687 27.433550557526154 26.521316543588895 23.56601547229226 34-35 23.48908439464746 26.362791898745076 25.564968205407773 24.583155501199695 36-37 24.63516019238149 26.17826490831035 25.155207104199466 24.03136779510869 38-39 22.69843376216282 25.87197520990169 26.85504319975899 24.5745478281765 40-41 22.875070385659615 24.492236954892206 27.724597501622906 24.908095157825272 42-43 23.767040502688104 24.698821107448865 27.339583460356288 24.194554929506744 44-45 21.882139437129915 26.039645507332658 27.691960074743292 24.38625498079413 46-47 23.432237887390116 24.089648914536564 26.968736214273676 25.50937698379964 48-49 22.725153413838985 23.973266002202127 27.506895104744622 25.794685479214262 50-51 21.31582628281227 24.243152416783527 28.61567098604481 25.82535031435939 52-53 20.82769949178864 24.221274581182907 30.144429580268344 24.806596346760106 54-55 20.03328300235635 24.508914321374643 29.317375663956447 26.14042701231256 56-57 20.900506059443156 24.805161734589575 27.89764759469337 26.3966846112739 58-59 20.29276847870139 24.49672011792512 29.328314581756754 25.882196821616738 60-61 20.981561647078234 25.474766965185548 27.452917821828343 26.090753565907875 62-63 19.056670767266453 26.667646984983197 27.153263204708395 27.12241904304195 64-65 19.653469430207913 27.2454370366651 26.071206975084372 27.029886558042616 66-67 19.893049662686813 27.012312558953592 25.57339655190965 27.521241226449945 68-69 19.683775612310406 27.439289006208284 25.07271690439386 27.80421847708745 70-71 20.298686253904837 27.062882637964858 24.8173559380391 27.821075170091202 72-73 19.947385598645724 26.429142711632192 24.754233002535678 28.869238687186403 74-75 19.73972548696117 26.985234254234797 24.605391989842946 28.66964826896109 76 20.271787275707354 27.235394751471375 24.276507149748404 28.216310823072867 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 0.5 14 2.0 15 5.5 16 7.5 17 8.0 18 13.0 19 26.0 20 45.0 21 56.0 22 74.0 23 153.0 24 319.5 25 425.0 26 571.0 27 779.5 28 1099.5 29 1357.0 30 1545.0 31 1987.0 32 3042.0 33 3843.0 34 4260.0 35 5511.0 36 7092.5 37 7840.0 38 9135.0 39 12395.0 40 15693.0 41 17602.0 42 18178.0 43 18399.5 44 18367.5 45 18262.0 46 18410.0 47 18203.5 48 16900.0 49 15196.5 50 14590.0 51 13391.0 52 10882.5 53 8777.0 54 7981.0 55 7180.5 56 5764.0 57 4562.5 58 3977.0 59 3656.5 60 3094.0 61 2753.0 62 2654.0 63 2521.5 64 2409.5 65 2504.0 66 2561.5 67 2545.0 68 2511.5 69 2459.0 70 2447.0 71 2454.0 72 2392.5 73 2226.0 74 2072.5 75 2024.0 76 1888.5 77 1594.0 78 1286.0 79 1137.0 80 996.5 81 721.0 82 540.5 83 495.0 84 374.0 85 221.5 86 156.5 87 123.0 88 92.0 89 47.0 90 25.0 91 12.0 92 7.0 93 7.0 94 3.5 95 0.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 278821.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.15065938361888 #Duplication Level Percentage of deduplicated Percentage of total 1 58.85146758122275 19.509649560112045 2 18.22007767956638 12.080151781967642 3 7.8101502742586355 7.76734894430477 4 3.6892384589585743 4.892027501515309 5 2.019885103482598 3.3480261529798687 6 1.310166502580303 2.6059730077720116 7 1.0277937055749693 2.38504273351003 8 0.8341357336824226 2.2121719669608817 9 0.6383139855676125 1.9044476563816928 >10 5.277450206099686 33.69509470233591 >50 0.2910279018943861 6.367526118907829 >100 0.029210979000551765 1.542566736364908 >500 0.0 0.0 >1k 0.0010818881111315467 1.6899731368871067 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT 4712 1.6899731368871067 No Hit TCTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCG 494 0.17717460306074506 No Hit CTTATACACATCTCCGAGCCCACGAGACAAATACAGACCTCGTATGCCGT 392 0.14059199271217018 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCC 289 0.1036507293209622 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0010759591278992615 0.0 2 0.0 0.0 0.0 0.0010759591278992615 0.0 3 0.0 0.0 0.0 0.0010759591278992615 0.0 4 0.0 0.0 0.0 0.0014346121705323487 0.0 5 0.0 0.0 0.0 0.0028692243410646974 0.0 6 0.0 0.0 0.0 0.0028692243410646974 0.0 7 0.0 0.0 0.0 0.0028692243410646974 0.0 8 0.0 0.0 0.0 0.0028692243410646974 0.0 9 0.0 0.0 0.0 0.0028692243410646974 0.0 10 0.0 0.0 0.0 0.0028692243410646974 0.0 11 0.0 0.0 0.0 0.0028692243410646974 0.0 12 0.0 0.0 0.0 0.0028692243410646974 0.0 13 0.0 0.0 0.0 0.0028692243410646974 0.0 14 0.0 0.0 0.0 0.0028692243410646974 0.0 15 0.0 0.0 0.0 0.0032278773836977846 0.0 16 0.0 0.0 0.0 0.0032278773836977846 0.0 17 0.0 0.0 0.0 0.0032278773836977846 0.0 18 0.0 0.0 0.0 0.003945183468963959 0.0 19 0.0 0.0 0.0 0.004303836511597046 0.0 20 0.0 0.0 0.0 0.004662489554230134 0.0 21 0.0 0.0 0.0 0.004662489554230134 0.0 22 0.0 0.0 0.0 0.005379795639496308 0.0 23 0.0 0.0 0.0 0.006097101724762482 0.0 24 0.0 0.0 0.0 0.0071730608526617435 0.0 25 0.0 0.0 0.0 0.0071730608526617435 0.0 26 0.0 0.0 0.0 0.007890366937927919 0.0 27 0.0 0.0 0.0 0.019725917344819793 0.0 28 0.0 0.0 0.0 0.0390931816470065 0.0 29 0.0 0.0 0.0 0.060612364204991734 0.0 30 0.0 0.0 0.0 0.07782771025137991 0.0 31 0.0 0.0 0.0 0.0979122806388328 0.0 32 0.0 0.0 0.0 0.12337664666578199 0.0 33 0.0 0.0 0.0 0.1678496239522848 0.0 34 0.0 0.0 0.0 0.2435254159478662 0.0 35 0.0 0.0 0.0 0.3611636139315188 0.0 36 0.0 0.0 0.0 0.5505324204417889 0.0 37 0.0 0.0 0.0 0.847497139741985 0.0 38 0.0 0.0 0.0 1.2567202613863375 0.0 39 0.0 0.0 0.0 1.7251211350651494 0.0 40 0.0 0.0 0.0 2.2469613120962912 0.0 41 0.0 0.0 0.0 2.841966709824583 0.0 42 0.0 0.0 0.0 3.5029642673973624 0.0 43 0.0 0.0 0.0 4.252549126500515 0.0 44 0.0 0.0 0.0 5.085700144537176 0.0 45 0.0 0.0 0.0 6.078093113502929 0.0 46 0.0 0.0 0.0 7.082321632875573 0.0 47 0.0 0.0 0.0 8.118470273042561 0.0 48 0.0 0.0 0.0 9.127002628926803 0.0 49 0.0 0.0 0.0 10.12943788308628 0.0 50 0.0 0.0 0.0 11.04113391745959 0.0 51 0.0 0.0 0.0 11.871415711155185 0.0 52 0.0 0.0 0.0 12.729672442176163 0.0 53 0.0 0.0 0.0 13.586135907983975 0.0 54 0.0 0.0 0.0 14.497114636272016 0.0 55 0.0 0.0 0.0 15.492735482621466 0.0 56 0.0 0.0 0.0 16.447469882110745 0.0 57 0.0 0.0 0.0 17.386423547724167 0.0 58 0.0 0.0 0.0 18.328246437678654 0.0 59 0.0 0.0 0.0 19.20694639212972 0.0 60 0.0 0.0 0.0 20.066279082278594 0.0 61 0.0 0.0 0.0 20.918080058532176 0.0 62 0.0 0.0 0.0 21.72146287403029 0.0 63 0.0 0.0 0.0 22.553537932939054 0.0 64 0.0 0.0 0.0 23.42434752045219 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGTAT 35 2.9677358E-7 60.000004 39 ATATCGT 25 2.3878862E-4 56.000004 37 TCGTATG 755 0.0 55.16556 40 CCGTCTT 730 0.0 55.136986 47 CTCGTAT 705 0.0 55.10638 39 TATGCCG 750 0.0 55.06666 43 TCTTCTG 745 0.0 54.966442 50 TCTCGTA 590 0.0 54.57627 38 CGTCTTC 740 0.0 54.39189 48 CGTATGC 770 0.0 54.090908 41 GTCTTCT 770 0.0 53.181816 49 CTTGAAA 725 0.0 53.10345 57 GGATCCA 20 0.006946543 52.5 62 ACACTGC 20 0.006946543 52.5 6 GCCGTCT 775 0.0 52.387093 46 ATGCCGT 795 0.0 51.949684 44 AGATCTC 630 0.0 51.666664 35 GTATGCC 800 0.0 51.625004 42 CTTCTGC 775 0.0 51.483868 51 ACAGATC 630 0.0 51.11111 33 >>END_MODULE