##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781217_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 229834 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.334154215651296 34.0 32.0 34.0 23.0 34.0 2 31.21841415978489 34.0 32.0 34.0 23.0 34.0 3 31.200897169261292 34.0 32.0 34.0 23.0 34.0 4 31.370824160045945 34.0 33.0 34.0 23.0 34.0 5 31.37300834515346 34.0 33.0 34.0 23.0 34.0 6 34.14634475316968 37.0 34.0 38.0 24.0 38.0 7 34.04895272239965 37.0 34.0 38.0 24.0 38.0 8 33.86892713871751 37.0 34.0 38.0 23.0 38.0 9 34.19443163326575 37.0 34.0 38.0 24.0 38.0 10-11 34.018206618690016 37.0 34.0 38.0 23.0 38.0 12-13 33.984332170174994 37.0 34.0 38.0 23.0 38.0 14-15 33.84370241130555 37.0 34.0 38.0 23.0 38.0 16-17 33.82755597518209 37.0 34.0 38.0 23.0 38.0 18-19 33.88052681500561 37.0 34.0 38.0 23.0 38.0 20-21 33.78157931376559 37.0 34.0 38.0 22.5 38.0 22-23 33.85866103361556 37.0 34.0 38.0 23.0 38.0 24-25 33.86095399288182 37.0 34.0 38.0 23.0 38.0 26-27 33.77624067805459 37.0 34.0 38.0 23.0 38.0 28-29 33.85470382972058 37.0 34.0 38.0 23.0 38.0 30-31 33.94800812760514 37.0 34.0 38.0 23.0 38.0 32-33 33.889185238041364 37.0 34.0 38.0 23.0 38.0 34-35 33.8921025609788 37.0 34.0 38.0 23.0 38.0 36-37 33.74946700662217 37.0 34.0 38.0 22.5 38.0 38-39 33.76363375305655 37.0 34.0 38.0 23.0 38.0 40-41 33.76562214467833 37.0 34.0 38.0 23.0 38.0 42-43 33.84196637573205 37.0 34.0 38.0 23.0 38.0 44-45 33.87705691934178 37.0 34.0 38.0 23.0 38.0 46-47 33.87491624389777 37.0 34.0 38.0 23.0 38.0 48-49 33.83339714750646 37.0 34.0 38.0 23.0 38.0 50-51 33.69105963434479 37.0 34.0 38.0 22.5 38.0 52-53 33.76421460706423 37.0 34.0 38.0 23.0 38.0 54-55 33.73993403935014 37.0 34.0 38.0 23.0 38.0 56-57 33.70580505930367 37.0 34.0 38.0 22.5 38.0 58-59 33.71215529469095 37.0 34.0 38.0 23.0 38.0 60-61 33.690102421747866 37.0 34.0 38.0 23.0 38.0 62-63 33.657563719902186 37.0 34.0 38.0 22.5 38.0 64-65 33.674597753160974 37.0 34.0 38.0 23.0 38.0 66-67 33.574769181235155 37.0 34.0 38.0 22.0 38.0 68-69 33.33675609352837 37.0 34.0 38.0 21.5 38.0 70-71 33.48203268445922 37.0 34.0 38.0 22.0 38.0 72-73 33.43788777987591 37.0 33.5 38.0 22.0 38.0 74-75 33.43985659214911 37.0 33.0 38.0 22.0 38.0 76 32.01903982874597 36.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 8.0 13 38.0 14 110.0 15 343.0 16 814.0 17 1491.0 18 1912.0 19 2123.0 20 2039.0 21 1957.0 22 2053.0 23 2412.0 24 2805.0 25 3378.0 26 4126.0 27 4769.0 28 5761.0 29 6853.0 30 8230.0 31 9618.0 32 11594.0 33 14020.0 34 17408.0 35 22821.0 36 33495.0 37 69654.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.75881723330752 17.905966915251877 8.934274302322546 25.400941549118063 2 24.199204643351287 19.64678855173734 30.382798019440116 25.771208785471256 3 19.831704621596458 21.507261762837526 29.465179216303945 29.19585439926208 4 14.184585396416544 16.30220071877964 36.86878355682797 32.64443032797584 5 13.942671667377324 33.64167181531018 35.86196994352446 16.55368657378804 6 29.89766527145679 37.00714428674608 18.424167007492365 14.67102343430476 7 29.335520419085082 28.592375366568916 22.22038514754127 19.851719066804737 8 25.889119973546126 33.531157270029674 19.638086619038088 20.941636137386112 9 24.82226302461777 15.573848951852206 21.048234812951957 38.555653210578065 10-11 25.913920481738995 23.65729178450534 27.609492068188345 22.81929566556732 12-13 25.72378325226033 22.34286485028325 26.201736905766772 25.731614991689653 14-15 24.321684346093267 23.2398165632587 23.547212335859793 28.891286754788236 16-17 24.468747008710633 26.115370223726693 24.947788403804484 24.46809436375819 18-19 23.774115230992805 25.906958935579596 25.92762602574032 24.391299807687286 20-21 23.764325556706144 25.858663209098744 25.99093258612738 24.386078648067734 22-23 24.026471279271124 25.41573483470679 26.415804450168384 24.141989435853702 24-25 23.49652357788665 25.834297797540835 26.190859489892702 24.47831913467981 26-27 22.97136193948676 26.04706005203756 26.378168591244116 24.603409417231568 28-29 23.909647832783662 25.42443676740604 27.264895533297945 23.40101986651235 30-31 23.941409887135933 25.450760113821282 26.456921082172354 24.150908916870435 32-33 23.44518217496106 25.940243828154237 26.1012295830904 24.513344413794304 34-35 24.513126865476824 25.088324616897413 26.47476004420582 23.923788473419947 36-37 24.47135758852041 24.838144051793904 25.938285893296904 24.752212466388784 38-39 23.618133087358704 25.6030439360582 27.000139230923185 23.77868374565991 40-41 23.857653784905626 24.469182105345595 27.37084156391135 24.30232254583743 42-43 23.324877955393895 24.924728282151463 26.9196463534551 24.83074740899954 44-45 22.65939765221856 25.016968768763544 27.316019387906053 25.007614191111845 46-47 23.12386331004116 24.460480172646346 27.45111689306195 24.964539624250545 48-49 22.6402534002802 24.282960745581594 28.155320796748956 24.92146505738925 50-51 22.341342012060878 24.581872133800918 27.790709816650278 25.286076037487927 52-53 22.00675269977462 24.356056980255314 28.359381118546427 25.277809201423633 54-55 21.369553677871856 24.918201832627027 28.383746530104336 25.328497959396785 56-57 21.25042965979646 25.09430760595737 28.134993669316415 25.520269064929753 58-59 21.789686882025467 24.70005460474648 27.785114006443795 25.725144506784257 60-61 21.28732041386392 24.568601686434558 28.000426394702266 26.14365150499926 62-63 20.641246815629575 24.20339071545271 28.628333119410353 26.52702934950736 64-65 21.453791549099673 24.455747312728562 27.782938518536245 26.30752261963552 66-67 21.654589082966584 24.42550803081361 27.078950631652916 26.84095225456689 68-69 21.42072413290491 24.648277992546777 26.79048093511172 27.140516939436594 70-71 21.934744206688308 24.39717361225928 26.876789334911283 26.79129284614113 72-73 22.00327192669492 23.771069554548067 26.77911014036217 27.44654837839484 74-75 22.320457373582673 24.126761053630013 26.46322998337931 27.089551589408007 76 22.776873743658467 23.949894271517707 26.19020684494026 27.08302513988357 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.0 12 2.0 13 2.0 14 3.5 15 4.5 16 5.0 17 6.0 18 18.5 19 37.5 20 54.0 21 64.0 22 85.5 23 156.5 24 308.5 25 411.0 26 526.5 27 752.5 28 961.0 29 1059.0 30 1300.0 31 1721.5 32 2562.0 33 3222.0 34 3670.5 35 4707.5 36 6130.5 37 6965.0 38 7668.0 39 9431.5 40 11595.0 41 13460.5 42 14223.0 43 14452.0 44 14885.0 45 15004.0 46 14919.0 47 14660.5 48 13620.5 49 12330.0 50 11821.0 51 10827.5 52 8808.5 53 7126.0 54 6469.0 55 5852.5 56 4779.5 57 3900.5 58 3478.0 59 3139.5 60 2774.0 61 2692.0 62 2637.0 63 2510.0 64 2369.0 65 2302.0 66 2296.5 67 2344.0 68 2314.5 69 2335.5 70 2347.5 71 2309.0 72 2234.0 73 2082.5 74 1925.5 75 1845.0 76 1723.5 77 1461.0 78 1180.5 79 1041.0 80 900.0 81 654.0 82 443.0 83 337.0 84 281.0 85 187.0 86 117.5 87 86.0 88 70.0 89 40.5 90 19.0 91 8.0 92 5.0 93 3.5 94 3.0 95 3.5 96 3.0 97 2.0 98 0.5 99 2.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 4.350966349626252E-4 58-59 2.175483174813126E-4 60-61 0.0 62-63 2.175483174813126E-4 64-65 2.175483174813126E-4 66-67 2.175483174813126E-4 68-69 2.175483174813126E-4 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 229834.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.487750536180506 #Duplication Level Percentage of deduplicated Percentage of total 1 72.5871654768638 32.29239709863171 2 12.082723490839562 10.75066376916237 3 5.025716140945086 6.707484178320621 4 2.4557002014894955 4.369943118220515 5 1.4132262757876692 3.1435629004208625 6 0.9075020572846357 2.4223635081329675 7 0.7845694469602901 2.443261088427494 8 0.5836796873689779 2.077327705976553 9 0.48073618069381546 1.9248184152380392 >10 3.5340605714987925 29.665947022745563 >50 0.13692485811516847 3.7998378785425055 >100 0.007995612152710569 0.40239331618078256 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0034807730797010014 0.0 2 0.0 0.0 0.0 0.0034807730797010014 0.0 3 0.0 0.0 0.0 0.0034807730797010014 0.0 4 0.0 0.0 0.0 0.004350966349626252 0.0 5 0.0 0.0 0.0 0.004786062984588877 0.0 6 0.0 0.0 0.0 0.004786062984588877 0.0 7 0.0 0.0 0.0 0.005656256254514128 0.0 8 0.0 0.0 0.0 0.005656256254514128 0.0 9 0.0 0.0 0.0 0.006961546159402003 0.0 10 0.0 0.0 0.0 0.006961546159402003 0.0 11 0.0 0.0 0.0 0.006961546159402003 0.0 12 0.0 0.0 0.0 0.006961546159402003 0.0 13 0.0 0.0 0.0 0.006961546159402003 0.0 14 0.0 0.0 0.0 0.007396642794364628 0.0 15 0.0 0.0 0.0 0.008266836064289879 0.0 16 0.0 0.0 0.0 0.008701932699252504 0.0 17 0.0 0.0 0.0 0.008701932699252504 0.0 18 0.0 0.0 0.0 0.00913702933421513 0.0 19 0.0 0.0 0.0 0.01000722260414038 4.3509663496262517E-4 20 0.0 0.0 0.0 0.01000722260414038 4.3509663496262517E-4 21 0.0 0.0 0.0 0.012182705778953506 4.3509663496262517E-4 22 0.0 0.0 0.0 0.013923092318804006 4.3509663496262517E-4 23 0.0 0.0 0.0 0.016098575493617134 4.3509663496262517E-4 24 0.0 0.0 0.0 0.017838962033467635 4.3509663496262517E-4 25 0.0 0.0 0.0 0.01914425193835551 4.3509663496262517E-4 26 0.0 0.0 0.0 0.021319735113168634 4.3509663496262517E-4 27 0.0 0.0 0.0 0.03176205435227164 4.3509663496262517E-4 28 0.0 0.0 0.0 0.04525005003611302 4.3509663496262517E-4 29 0.0 0.0 0.0 0.06526449524439377 4.3509663496262517E-4 30 0.0 0.0 0.0 0.08179816737297353 4.3509663496262517E-4 31 0.0 0.0 0.0 0.10572848229591793 4.3509663496262517E-4 32 0.0 0.0 0.0 0.1327044736636007 4.3509663496262517E-4 33 0.0 0.0 0.0 0.17229826744519958 4.3509663496262517E-4 34 0.0 0.0 0.0 0.2506156617384721 4.3509663496262517E-4 35 0.0 0.0 0.0 0.3615653036539415 4.3509663496262517E-4 36 0.0 0.0 0.0 0.5277722182096644 4.3509663496262517E-4 37 0.0 0.0 0.0 0.7801282664879869 4.3509663496262517E-4 38 0.0 0.0 0.0 1.0873064907716004 4.3509663496262517E-4 39 0.0 0.0 0.0 1.4606194035695328 4.3509663496262517E-4 40 0.0 0.0 0.0 1.838718379352054 4.3509663496262517E-4 41 0.0 0.0 0.0 2.252930375836473 4.3509663496262517E-4 42 0.0 0.0 0.0 2.7411088002645387 4.3509663496262517E-4 43 0.0 0.0 0.0 3.295857009841886 4.3509663496262517E-4 44 0.0 0.0 0.0 3.93457886996702 4.3509663496262517E-4 45 0.0 0.0 0.0 4.721233585979446 4.3509663496262517E-4 46 0.0 0.0 0.0 5.59708311215921 4.3509663496262517E-4 47 0.0 0.0 0.0 6.480764377768303 4.3509663496262517E-4 48 0.0 0.0 0.0 7.308318177467216 4.3509663496262517E-4 49 0.0 0.0 0.0 8.134566687261241 4.3509663496262517E-4 50 0.0 0.0 0.0 8.833331883011217 4.3509663496262517E-4 51 0.0 0.0 0.0 9.521219662887127 4.3509663496262517E-4 52 0.0 0.0 0.0 10.209107442763038 4.3509663496262517E-4 53 0.0 0.0 0.0 10.913528894767527 4.3509663496262517E-4 54 0.0 0.0 0.0 11.695832644430327 4.3509663496262517E-4 55 0.0 0.0 0.0 12.531218183558568 4.3509663496262517E-4 56 0.0 0.0 0.0 13.426211961676689 4.3509663496262517E-4 57 0.0 0.0 0.0 14.329472575859098 4.3509663496262517E-4 58 0.0 0.0 0.0 15.1618124385426 4.3509663496262517E-4 59 0.0 0.0 0.0 15.958039280524204 4.3509663496262517E-4 60 0.0 0.0 0.0 16.74948005952122 4.3509663496262517E-4 61 0.0 0.0 0.0 17.488274145687758 4.3509663496262517E-4 62 0.0 0.0 0.0 18.214015332805417 4.3509663496262517E-4 63 0.0 0.0 0.0 18.923657944429458 4.3509663496262517E-4 64 0.0 0.0 0.0 19.63852171567305 4.3509663496262517E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGAAT 20 0.0069449972 52.5 66 GTTAAGC 35 0.0012536738 40.0 21 CGGTATG 35 0.0012536738 40.0 43 CGTCCAA 35 0.0012536738 40.0 40 ACTAATG 45 9.178936E-5 38.888885 13 CAAGTGC 40 0.0024154212 35.0 44 GCGGTAT 40 0.0024154212 35.0 42 GACGCTC 40 0.0024154212 35.0 58 CTTTAGA 40 0.0024154212 35.0 2 GCACTTT 80 6.2140316E-8 35.0 49 AGAGATC 50 1.7062368E-4 35.0 6 CTTACGT 40 0.0024154212 35.0 23 AAGAGAT 55 2.9860612E-4 31.81818 5 ACTTATG 55 2.9860612E-4 31.81818 48 TACGGAC 55 2.9860612E-4 31.81818 38 GCATAAG 45 0.004301361 31.111109 52 ATCTCAG 45 0.004301361 31.111109 52 AAGCGCG 45 0.004301361 31.111109 7 GAATAAG 45 0.004301361 31.111109 36 TTATCTT 45 0.004301361 31.111109 32 >>END_MODULE