##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781217_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 206908 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.28898834264504 34.0 34.0 34.0 33.0 34.0 2 33.293362267287876 34.0 34.0 34.0 33.0 34.0 3 33.337855471997216 34.0 34.0 34.0 33.0 34.0 4 33.39309258221045 34.0 34.0 34.0 33.0 34.0 5 33.4092833529878 34.0 34.0 34.0 34.0 34.0 6 36.860266398592614 38.0 37.0 38.0 34.0 38.0 7 36.75311732750788 38.0 37.0 38.0 34.0 38.0 8 36.539220329808415 38.0 37.0 38.0 34.0 38.0 9 36.50993678349798 38.0 37.0 38.0 34.0 38.0 10-11 36.40408539060839 38.0 37.0 38.0 34.0 38.0 12-13 36.34500840953467 38.0 37.0 38.0 34.0 38.0 14-15 36.34876128520888 38.0 37.0 38.0 34.0 38.0 16-17 36.28226071490711 38.0 37.0 38.0 34.0 38.0 18-19 36.277985868115294 38.0 37.0 38.0 34.0 38.0 20-21 36.2151342625708 38.0 37.0 38.0 33.5 38.0 22-23 36.28135451505017 38.0 37.0 38.0 34.0 38.0 24-25 36.292347323448105 38.0 37.0 38.0 34.0 38.0 26-27 36.06624200127593 38.0 37.0 38.0 32.5 38.0 28-29 36.06690171477179 38.0 37.0 38.0 32.5 38.0 30-31 36.090581321166894 38.0 37.0 38.0 33.0 38.0 32-33 36.0288437373132 38.0 37.0 38.0 32.0 38.0 34-35 36.03359705762948 38.0 37.0 38.0 32.0 38.0 36-37 35.9914744717459 38.0 37.0 38.0 32.0 38.0 38-39 35.775209271753624 38.0 36.0 38.0 31.0 38.0 40-41 35.91115374949253 38.0 36.5 38.0 31.5 38.0 42-43 35.97878525721577 38.0 37.0 38.0 32.0 38.0 44-45 35.96075067179616 38.0 37.0 38.0 32.0 38.0 46-47 35.95187957932994 38.0 37.0 38.0 32.0 38.0 48-49 35.94271125331065 38.0 37.0 38.0 32.0 38.0 50-51 35.83191080093568 38.0 36.0 38.0 31.0 38.0 52-53 35.845614959305586 38.0 36.5 38.0 31.0 38.0 54-55 35.8743523691689 38.0 37.0 38.0 32.0 38.0 56-57 35.83613973360141 38.0 36.0 38.0 31.0 38.0 58-59 35.81311259110329 38.0 36.0 38.0 31.0 38.0 60-61 35.79684932433739 38.0 36.0 38.0 31.0 38.0 62-63 35.78713727840393 38.0 36.0 38.0 31.0 38.0 64-65 35.750942447851216 38.0 36.0 38.0 31.0 38.0 66-67 35.700134842538716 38.0 36.0 38.0 31.0 38.0 68-69 35.571983683569506 38.0 36.0 38.0 31.0 38.0 70-71 35.36954588512769 38.0 36.0 38.0 29.5 38.0 72-73 35.21926411738551 38.0 36.0 38.0 27.0 38.0 74-75 35.23396388733157 38.0 36.0 38.0 27.0 38.0 76 34.29896379067025 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 8.0 22 28.0 23 80.0 24 156.0 25 348.0 26 609.0 27 1117.0 28 1846.0 29 2929.0 30 4313.0 31 6437.0 32 8697.0 33 12491.0 34 17213.0 35 23412.0 36 34715.0 37 92508.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.257312428712275 17.568194559901016 9.191524735631296 27.98296827575541 2 23.95605776480368 19.535735689291858 31.76290911902875 24.745297426875712 3 19.836835695091537 21.420631391729657 30.29462369748874 28.447909215690064 4 13.881531888568832 18.297987511357704 36.23881145243297 31.581669147640497 5 13.324762696464129 33.95035474703733 37.26970440968933 15.455178146809208 6 29.8093838807586 39.50064763083109 16.910414290409264 13.779554198001042 7 28.520405204245364 28.763508419200807 21.113248400255184 21.602837976298645 8 25.27935120923309 35.98942525180273 18.211475631681715 20.51974790728246 9 24.230575908133083 14.9771879289346 19.556517872677713 41.23571829025461 10-11 25.01836565043401 25.026581862470277 27.457614012024667 22.497438475071046 12-13 24.801844297948847 22.05835443772111 26.558905407234136 26.58089585709591 14-15 23.13636978753842 22.879492334757476 22.497921781661415 31.486216096042686 16-17 25.277901289461983 26.802975235370308 23.592611208846446 24.326512266321263 18-19 24.793386432617396 25.62757360759371 24.39248361590659 25.186556343882305 20-21 22.89544145223964 25.396311404102306 24.646219575850136 27.062027567807917 22-23 23.48580045237497 26.499942003209153 24.786136833761866 25.22812071065401 24-25 24.71726564463433 26.710422023314713 24.706391246351036 23.865921085699927 26-27 23.93189243528525 27.171013203936052 25.113577048736634 23.783517312042065 28-29 23.16198503682796 26.675623948808163 25.727376418504843 24.435014595859027 30-31 25.074187561621592 26.809499874340286 24.79362808591258 23.322684478125545 32-33 22.791288882015195 25.85593597154291 24.730314922574284 26.622460223867613 34-35 25.181239971388248 26.27327121232625 25.00724959885553 23.538239217429968 36-37 23.719720842113404 26.149786378487054 24.566473988439306 25.564018790960237 38-39 22.769781738743788 25.656330349720648 26.789200997544803 24.784686913990758 40-41 22.860885031028282 24.146480561408936 27.609130628105245 25.383503779457538 42-43 24.55680785663193 24.53940881937866 26.88682892879927 24.016954395190133 44-45 21.981025383262125 26.412221857057244 27.649728381696214 23.957024377984418 46-47 24.03242020608193 24.051752469696677 26.299853074796527 25.615974249424866 48-49 23.51431554120672 23.702563458155314 26.66402459063932 26.119096409998647 50-51 21.798335492102773 23.9649989367255 28.093887138245016 26.14277843292671 52-53 21.275397761323873 23.91932646393566 30.081485491136156 24.72379028360431 54-55 20.51974790728246 24.33931989096603 28.86186131034083 26.279070891410676 56-57 21.923028592417886 24.38378409727995 26.992431418794826 26.700755891507338 58-59 20.894552168113364 24.008254876563498 29.424188528234772 25.67300442708837 60-61 21.944052429098925 25.4395673439403 26.818199392966925 25.79818083399385 62-63 19.30930655170414 26.968749395866766 27.05743615519941 26.66450789722969 64-65 20.02653353181124 27.582065459044596 26.049258607690373 26.34214240145379 66-67 20.213814835579097 27.441181587952133 25.303758192046704 27.041245384422062 68-69 19.98472751174435 28.078662980648406 24.73732286813463 27.199286639472614 70-71 20.528689079204284 27.26912444178089 24.825043014286543 27.377143464728288 72-73 20.64226612794092 25.854244398476617 24.64887776209716 28.854611711485294 74-75 20.49630753764958 26.03161791714192 24.63244533802463 28.83962920718387 76 20.95617375838537 26.129004195101203 24.313221335086123 28.6016007114273 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 0.0 14 0.5 15 2.0 16 5.5 17 8.0 18 15.0 19 24.0 20 47.0 21 68.0 22 62.5 23 154.0 24 288.5 25 326.0 26 435.0 27 606.5 28 758.5 29 848.0 30 1100.5 31 1512.5 32 2248.5 33 2825.0 34 3201.5 35 4089.5 36 5303.5 37 6006.0 38 6503.5 39 7938.5 40 9941.5 41 11768.5 42 12530.0 43 13488.0 44 14669.0 45 14633.0 46 14374.0 47 14061.5 48 12658.5 49 11058.0 50 10548.0 51 9665.0 52 7692.0 53 6098.0 54 5594.0 55 5059.0 56 4148.5 57 3345.5 58 2918.0 59 2578.5 60 2218.5 61 2149.0 62 2100.0 63 2087.0 64 2124.5 65 2142.5 66 2160.0 67 2210.0 68 2187.5 69 2107.0 70 2055.5 71 2062.0 72 2056.5 73 1971.0 74 1833.5 75 1776.0 76 1681.0 77 1378.0 78 1102.5 79 1035.0 80 858.5 81 610.0 82 427.5 83 317.0 84 254.5 85 159.0 86 88.0 87 50.0 88 40.5 89 22.0 90 13.5 91 11.5 92 9.0 93 5.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 206908.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.509540472093875 #Duplication Level Percentage of deduplicated Percentage of total 1 59.67676428161282 20.594177122199238 2 18.125288853409522 12.509907785102559 3 7.359634749240228 7.6193283971620245 4 3.512457459770598 4.84853171457846 5 2.004117474055712 3.458058654087807 6 1.4061033850118343 2.9114389003808454 7 1.0447740291024186 2.5238270149051756 8 0.8346988221783399 2.3044058228778006 9 0.7058526952649048 2.1922786939122703 >10 5.107628531014103 33.170781216772674 >50 0.20587370278559725 4.552264774682468 >100 0.015405515174432446 1.0304096506659965 >500 0.0 0.0 >1k 0.0014005013794938588 2.2845902526726856 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCGT 4727 2.2845902526726856 No Hit TCTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCG 435 0.21023836681036984 No Hit CTTATACACATCTCCGAGCCCACGAGACAGACCAGCACCTCGTATGCCGT 351 0.16964061321940185 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCC 316 0.15272488255649855 No Hit CTTATACACATCTCCGAGCCCACGAGACAGACCAGCAACTCGTATGCCGT 243 0.1174435014595859 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00386645272294933 0.0 2 0.0 0.0 0.0 0.00386645272294933 0.0 3 0.0 0.0 0.0 0.00386645272294933 0.0 4 0.0 0.0 0.0 0.004833065903686663 0.0 5 0.0 0.0 0.0 0.0053163724940553285 0.0 6 0.0 0.0 0.0 0.0053163724940553285 0.0 7 0.0 0.0 0.0 0.0062829856747926615 0.0 8 0.0 0.0 0.0 0.0062829856747926615 0.0 9 0.0 0.0 0.0 0.008216212036267326 0.0 10 0.0 0.0 0.0 0.008216212036267326 0.0 11 0.0 0.0 0.0 0.008216212036267326 0.0 12 0.0 0.0 0.0 0.008216212036267326 0.0 13 0.0 0.0 0.0 0.008216212036267326 0.0 14 0.0 0.0 0.0 0.008699518626635993 0.0 15 0.0 0.0 0.0 0.009666131807373326 0.0 16 0.0 0.0 0.0 0.010149438397741992 0.0 17 0.0 0.0 0.0 0.010149438397741992 0.0 18 0.0 0.0 0.0 0.010632744988110657 0.0 19 0.0 0.0 0.0 0.012082664759216656 0.0 20 0.0 0.0 0.0 0.012082664759216656 0.0 21 0.0 0.0 0.0 0.012082664759216656 0.0 22 0.0 0.0 0.0 0.012565971349585323 0.0 23 0.0 0.0 0.0 0.01546581089179732 0.0 24 0.0 0.0 0.0 0.016432424072534653 0.0 25 0.0 0.0 0.0 0.017399037253271986 0.0 26 0.0 0.0 0.0 0.020298876795483985 0.0 27 0.0 0.0 0.0 0.032864848145069306 0.0 28 0.0 0.0 0.0 0.04881396562723529 0.0 29 0.0 0.0 0.0 0.07201268196493127 0.0 30 0.0 0.0 0.0 0.08989502580857192 0.0 31 0.0 0.0 0.0 0.11599358168847991 0.0 32 0.0 0.0 0.0 0.14692520347207455 0.0 33 0.0 0.0 0.0 0.18993949001488583 0.0 34 0.0 0.0 0.0 0.27886790264272043 0.0 35 0.0 0.0 0.0 0.40307769636746765 0.0 36 0.0 0.0 0.0 0.5823844413942428 0.0 37 0.0 0.0 0.0 0.8680186363021246 0.0 38 0.0 0.0 0.0 1.2039167166083478 0.0 39 0.0 0.0 0.0 1.603127960252866 0.0 40 0.0 0.0 0.0 2.0095888027529143 0.0 41 0.0 0.0 0.0 2.4455313472654514 0.0 42 0.0 0.0 0.0 2.963152705550293 0.0 43 0.0 0.0 0.0 3.557136505113384 0.0 44 0.0 0.0 0.0 4.232799118448779 0.0 45 0.0 0.0 0.0 5.066502986834728 0.0 46 0.0 0.0 0.0 6.0017012391980975 0.0 47 0.0 0.0 0.0 6.9248168268022505 0.0 48 0.0 0.0 0.0 7.797185222417693 0.0 49 0.0 0.0 0.0 8.670036924623505 0.0 50 0.0 0.0 0.0 9.393546890405398 0.0 51 0.0 0.0 0.0 10.12478976163319 0.0 52 0.0 0.0 0.0 10.851682873547663 0.0 53 0.0 0.0 0.0 11.590175343630985 0.0 54 0.0 0.0 0.0 12.397780656137027 0.0 55 0.0 0.0 0.0 13.279815183559842 0.0 56 0.0 0.0 0.0 14.221296421598005 0.0 57 0.0 0.0 0.0 15.19805904073308 0.0 58 0.0 0.0 0.0 16.080576874746264 0.0 59 0.0 0.0 0.0 16.926846714481798 0.0 60 0.0 0.0 0.0 17.759100663096643 0.0 61 0.0 0.0 0.0 18.526108222011715 0.0 62 0.0 0.0 0.0 19.298915460011212 0.0 63 0.0 0.0 0.0 20.05094051462486 0.0 64 0.0 0.0 0.0 20.779283546310438 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTGTCTT 15 0.0022223196 70.00001 25 CCGGTAT 15 0.0022223196 70.00001 4 TATGCCG 690 0.0 58.84058 43 CCGTCTT 650 0.0 58.692307 47 TCTTCTG 645 0.0 58.604652 50 CGTATGC 695 0.0 58.417267 41 CTCGTAT 680 0.0 58.161766 39 TCTCGTA 610 0.0 57.95082 38 TCGTATG 685 0.0 57.73723 40 CATCTCG 635 0.0 56.22047 36 GCATCTC 630 0.0 56.111115 35 GTCTTCT 680 0.0 56.10294 49 CTGCTTG 690 0.0 55.797104 54 ATGCCGT 720 0.0 55.416664 44 GCCGTCT 695 0.0 55.395683 46 CGTCTTC 690 0.0 55.289856 48 ATCTCGT 645 0.0 54.806202 37 GTATGCC 750 0.0 54.599995 42 CTTCTGC 700 0.0 54.5 51 CAGCATC 660 0.0 54.090908 33 >>END_MODULE