##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781216_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 189827 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.206577567996124 34.0 32.0 34.0 23.0 34.0 2 31.25773994215786 34.0 32.0 34.0 23.0 34.0 3 31.236594372771 34.0 33.0 34.0 23.0 34.0 4 31.34737418807651 34.0 33.0 34.0 23.0 34.0 5 31.3935320054576 34.0 33.0 34.0 23.0 34.0 6 34.23587793095819 37.0 34.0 38.0 24.0 38.0 7 34.16667281261359 37.0 34.0 38.0 24.0 38.0 8 33.90503458412133 37.0 34.0 38.0 23.0 38.0 9 34.23488755551107 37.0 34.0 38.0 24.0 38.0 10-11 34.07572948000021 37.0 34.0 38.0 23.5 38.0 12-13 34.02282077891975 37.0 34.0 38.0 23.0 38.0 14-15 33.920648801276954 37.0 34.0 38.0 23.0 38.0 16-17 33.87251813493339 37.0 34.0 38.0 23.0 38.0 18-19 33.91948721730839 37.0 34.0 38.0 23.0 38.0 20-21 33.83099611751753 37.0 34.0 38.0 23.0 38.0 22-23 33.90008797484025 37.0 34.0 38.0 23.0 38.0 24-25 33.9182492479995 37.0 34.0 38.0 23.0 38.0 26-27 33.83768378576283 37.0 34.0 38.0 23.0 38.0 28-29 33.894825288288814 37.0 34.0 38.0 23.0 38.0 30-31 33.97358911008445 37.0 34.0 38.0 23.0 38.0 32-33 33.92152591570219 37.0 34.0 38.0 23.0 38.0 34-35 33.93053411790736 37.0 34.0 38.0 23.0 38.0 36-37 33.76861036628088 37.0 34.0 38.0 22.5 38.0 38-39 33.79000879748403 37.0 34.0 38.0 23.0 38.0 40-41 33.79243469053401 37.0 34.0 38.0 23.0 38.0 42-43 33.871172172557124 37.0 34.0 38.0 23.0 38.0 44-45 33.88286439758306 37.0 34.0 38.0 23.0 38.0 46-47 33.88432625495847 37.0 34.0 38.0 23.0 38.0 48-49 33.82882045230657 37.0 34.0 38.0 23.0 38.0 50-51 33.69584674466751 37.0 34.0 38.0 22.5 38.0 52-53 33.78211213367962 37.0 34.0 38.0 23.0 38.0 54-55 33.741127447623356 37.0 34.0 38.0 23.0 38.0 56-57 33.720911672206796 37.0 34.0 38.0 22.5 38.0 58-59 33.717018653826905 37.0 34.0 38.0 22.5 38.0 60-61 33.69550959557913 37.0 34.0 38.0 22.5 38.0 62-63 33.655768146786286 37.0 34.0 38.0 22.0 38.0 64-65 33.66983885327166 37.0 34.0 38.0 22.0 38.0 66-67 33.553509247894134 37.0 34.0 38.0 22.0 38.0 68-69 33.31716246898492 37.0 34.0 38.0 21.5 38.0 70-71 33.46208389744346 37.0 34.0 38.0 22.0 38.0 72-73 33.42364363341358 37.0 33.5 38.0 22.0 38.0 74-75 33.3957498143046 37.0 33.0 38.0 21.5 38.0 76 31.965853118892465 36.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 4.0 13 22.0 14 119.0 15 348.0 16 811.0 17 1363.0 18 1817.0 19 1888.0 20 1742.0 21 1730.0 22 1732.0 23 2010.0 24 2277.0 25 2658.0 26 3111.0 27 3632.0 28 4505.0 29 5363.0 30 6465.0 31 7619.0 32 9109.0 33 11151.0 34 14066.0 35 19076.0 36 28215.0 37 58993.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 45.56411890826911 18.95831467599446 9.75045699505339 25.727109420683043 2 23.28699289352937 19.208015719576245 31.41175912804817 26.09323225884621 3 20.048254463274457 20.98436997898086 28.53756314960464 30.429812408140045 4 14.477392573237738 16.12889631085146 35.148846054565475 34.24486506134533 5 14.504259141218057 33.454145090003 34.850153034078396 17.191442734700544 6 31.7815695343655 35.228392167605236 17.4632691872073 15.52676911082196 7 30.156932364732096 27.75000395096588 21.773509563971405 20.319554120330615 8 26.71906525415246 32.96159134369716 19.087906356840705 21.231437045309676 9 24.958514858265684 15.714835086684193 20.754687162521666 38.57196289252846 10-11 26.446975403920415 23.545649459771266 26.516512403398885 23.49086273290944 12-13 25.950997487185703 21.99871461910055 25.877772919553067 26.17251497416068 14-15 24.2115189093227 23.202442223708957 23.065738804279686 29.52030006268866 16-17 24.801793211713825 25.85749129470518 24.39379013522839 24.946925358352605 18-19 23.93231732050762 25.351504264409176 25.661259989358733 25.054918425724477 20-21 24.27341737476755 25.440269297834345 25.625437898718307 24.660875428679798 22-23 24.594235804179597 24.996180732983188 25.90595647615987 24.503626986677343 24-25 24.16489751194509 25.27617251497416 25.459760729506343 25.099169243574416 26-27 23.56724807324564 25.457390149978664 26.114040679144697 24.861321097631002 28-29 24.202563386662593 25.176344777086506 26.458038108382897 24.163053727868007 30-31 24.337159624289484 25.080204607353014 25.807709124624 24.774926643733505 32-33 23.642843220405947 25.52060560405 25.927818487359545 24.908732688184504 34-35 24.523645213799934 24.715662155541622 26.165403235577656 24.595289395080783 36-37 24.55182877040674 24.681157053527684 25.618589557860577 25.148424618204995 38-39 23.820699428162033 25.1023961354184 26.605347514704214 24.471556921715358 40-41 24.017921581229224 24.180437977737622 27.014070706485377 24.787569734547773 42-43 23.623088391008658 24.4217102941099 26.70247119745874 25.252730117422708 44-45 22.90770016910134 24.124070864524015 27.476860509832633 25.491368456542006 46-47 23.125003292471565 24.049792705990193 27.414171851211893 25.411032150326353 48-49 22.559224978533084 23.913352684286217 28.04158523286993 25.485837104310765 50-51 22.2997782191153 24.199402613959027 27.910939961122494 25.58987920580318 52-53 22.060613084545402 24.111691171435044 28.108224857370136 25.71947088664942 54-55 21.510111838674163 24.715398757816327 28.08188508484041 25.692604318669105 56-57 21.26567874959832 24.722247098674053 28.02630816480269 25.985765986924935 58-59 21.66130213299478 24.598976963234946 27.57010330458786 26.169617599182416 60-61 21.21695017041833 24.349802715103753 27.7579058827248 26.675341231753123 62-63 21.143725602785697 23.981572695138205 28.07003218720203 26.804669514874067 64-65 21.86885954052901 23.975251149731072 27.385461499154495 26.770427810585428 66-67 21.946561869491696 23.94548720677248 26.62476886849605 27.48318205523977 68-69 21.921275687863158 24.055060660496135 26.480163517307865 27.543500134332838 70-71 22.135944833980414 24.12064669409515 26.467783824218895 27.27562464770554 72-73 22.352194366449453 23.735295821985282 25.97391308928656 27.938596722278707 74-75 22.73754523855932 23.93521469548589 25.905166282983984 27.422073782970813 76 22.911387737255502 23.552497800628995 25.79085167020498 27.74526279191053 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.0 12 2.0 13 2.0 14 3.0 15 7.5 16 22.0 17 33.0 18 39.0 19 55.5 20 80.5 21 95.0 22 129.0 23 211.5 24 364.0 25 468.0 26 545.5 27 727.5 28 1005.0 29 1178.0 30 1383.0 31 1745.0 32 2364.0 33 2826.0 34 3229.0 35 4002.0 36 4995.0 37 5618.0 38 6173.5 39 7487.5 40 8981.5 41 10129.5 42 10542.0 43 10820.0 44 11255.5 45 11355.0 46 11297.0 47 11136.5 48 10399.5 49 9409.0 50 8995.0 51 8273.0 52 6777.5 53 5593.0 54 5182.0 55 4817.0 56 4151.5 57 3561.0 58 3271.0 59 2964.0 60 2602.5 61 2457.0 62 2366.0 63 2463.0 64 2495.5 65 2437.5 66 2407.0 67 2370.0 68 2352.0 69 2338.5 70 2296.5 71 2250.0 72 2227.0 73 2121.0 74 1928.5 75 1819.0 76 1714.0 77 1461.5 78 1185.0 79 1056.0 80 971.5 81 736.5 82 500.5 83 415.0 84 360.5 85 241.0 86 144.5 87 113.0 88 84.0 89 48.5 90 28.5 91 12.5 92 10.0 93 7.0 94 4.0 95 2.0 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 2.633977252972443E-4 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 189827.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.55399280776511 #Duplication Level Percentage of deduplicated Percentage of total 1 73.28271981483553 39.24582249897168 2 13.626947899468686 14.59554939599872 3 5.029355960236146 8.080262787665315 4 2.2229984801138993 4.762017784627702 5 1.2199954967213573 3.2667815028460696 6 0.8299968312493136 2.6669786598716136 7 0.6339975761564344 2.376717114353554 8 0.44499829862209034 1.9065148547100108 9 0.43099835214452437 2.0773514385815828 >10 2.256991370741976 20.294743520612325 >50 0.020999919710049345 0.727260441761439 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.267954505944886E-4 2 0.0 0.0 0.0 0.0 5.267954505944886E-4 3 0.0 0.0 0.0 0.0 5.267954505944886E-4 4 0.0 0.0 0.0 0.0 5.267954505944886E-4 5 0.0 0.0 0.0 0.0 5.267954505944886E-4 6 0.0 0.0 0.0 0.0 5.267954505944886E-4 7 0.0 0.0 0.0 0.0 5.267954505944886E-4 8 0.0 0.0 0.0 5.267954505944886E-4 5.267954505944886E-4 9 0.0 0.0 0.0 5.267954505944886E-4 5.267954505944886E-4 10 0.0 0.0 0.0 5.267954505944886E-4 5.267954505944886E-4 11 0.0 0.0 0.0 5.267954505944886E-4 5.267954505944886E-4 12 0.0 0.0 0.0 5.267954505944886E-4 5.267954505944886E-4 13 0.0 0.0 0.0 5.267954505944886E-4 5.267954505944886E-4 14 0.0 0.0 0.0 0.0010535909011889773 5.267954505944886E-4 15 0.0 0.0 0.0 0.0010535909011889773 5.267954505944886E-4 16 0.0 0.0 0.0 0.0010535909011889773 5.267954505944886E-4 17 0.0 0.0 0.0 0.0010535909011889773 5.267954505944886E-4 18 0.0 0.0 0.0 0.001580386351783466 5.267954505944886E-4 19 0.0 0.0 0.0 0.001580386351783466 5.267954505944886E-4 20 0.0 0.0 0.0 0.001580386351783466 5.267954505944886E-4 21 0.0 0.0 0.0 0.001580386351783466 5.267954505944886E-4 22 0.0 0.0 0.0 0.004214363604755909 5.267954505944886E-4 23 0.0 0.0 0.0 0.004214363604755909 5.267954505944886E-4 24 0.0 0.0 0.0 0.005267954505944887 5.267954505944886E-4 25 0.0 0.0 0.0 0.005267954505944887 5.267954505944886E-4 26 0.0 0.0 0.0 0.00790193175891733 5.267954505944886E-4 27 0.0 0.0 0.0 0.022125408924968525 5.267954505944886E-4 28 0.0 0.0 0.0 0.04056324969577563 5.267954505944886E-4 29 0.0 0.0 0.0 0.07059059037966148 5.267954505944886E-4 30 0.0 0.0 0.0 0.09008202205165756 5.267954505944886E-4 31 0.0 0.0 0.0 0.10851986282246466 5.267954505944886E-4 32 0.0 0.0 0.0 0.1448687489134844 5.267954505944886E-4 33 0.0 0.0 0.0 0.19860188487412223 5.267954505944886E-4 34 0.0 0.0 0.0 0.27235324795735066 5.267954505944886E-4 35 0.0 0.0 0.0 0.3950965879458665 5.267954505944886E-4 36 0.0 0.0 0.0 0.5926448819187997 5.267954505944886E-4 37 0.0 0.0 0.0 0.9129365158802488 5.267954505944886E-4 38 0.0 0.0 0.0 1.275371785889257 5.267954505944886E-4 39 0.0 0.0 0.0 1.7073440553767378 5.267954505944886E-4 40 0.0 0.0 0.0 2.245202210433711 5.267954505944886E-4 41 0.0 0.0 0.0 2.7735780473799827 5.267954505944886E-4 42 0.0 0.0 0.0 3.373071270156511 5.267954505944886E-4 43 0.0 0.0 0.0 4.122174400901874 5.267954505944886E-4 44 0.0 0.0 0.0 4.912367576793607 5.267954505944886E-4 45 0.0 0.0 0.0 5.777365706669757 5.267954505944886E-4 46 0.0 0.0 0.0 6.730338676795188 5.267954505944886E-4 47 0.0 0.0 0.0 7.694374351383101 5.267954505944886E-4 48 0.0 0.0 0.0 8.580971094733625 5.267954505944886E-4 49 0.0 0.0 0.0 9.433852929246102 5.267954505944886E-4 50 0.0 0.0 0.0 10.273564877493717 5.267954505944886E-4 51 0.0 0.0 0.0 11.071133189693773 5.267954505944886E-4 52 0.0 0.0 0.0 11.853951229277184 5.267954505944886E-4 53 0.0 0.0 0.0 12.65046595057605 5.267954505944886E-4 54 0.0 0.0 0.0 13.460677353590375 5.267954505944886E-4 55 0.0 0.0 0.0 14.349381278743277 5.267954505944886E-4 56 0.0 0.0 0.0 15.224388522180723 5.267954505944886E-4 57 0.0 0.0 0.0 16.01879606167721 5.267954505944886E-4 58 0.0 0.0 0.0 16.84270414640699 5.267954505944886E-4 59 0.0 0.0 0.0 17.60076279981246 5.267954505944886E-4 60 0.0 0.0 0.0 18.379366475791116 5.267954505944886E-4 61 0.0 0.0 0.0 19.14163949280134 5.267954505944886E-4 62 0.0 0.0 0.0 19.874411964578275 5.267954505944886E-4 63 0.0 0.0 0.0 20.576630300220728 5.267954505944886E-4 64 0.0 0.0 0.0 21.32573343096609 5.267954505944886E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCCGAA 25 2.385937E-4 55.999996 43 GACTGAC 20 0.006943143 52.5 7 ATCGAAT 20 0.006943143 52.5 68 CGAATAC 30 5.8669376E-4 46.666664 70 GGACTGA 35 0.0012531222 40.0 6 GACCGGA 35 0.0012531222 40.0 6 TCTATCG 35 0.0012531222 40.0 31 TACCGTT 40 0.002414365 35.0 12 TGCCGAA 50 1.7051188E-4 35.0 31 TCTATAC 55 2.984115E-4 31.81818 3 TCTACTG 45 0.004299493 31.111109 32 CAAATTC 45 0.004299493 31.111109 40 TGGCTAA 45 0.004299493 31.111109 64 GAGCACA 60 4.9688155E-4 29.166666 46 TCAATCC 50 0.007195449 27.999998 48 TGGATGG 50 0.007195449 27.999998 19 TAGTGAT 50 0.007195449 27.999998 4 GACTGAG 50 0.007195449 27.999998 7 TGAGAGC 50 0.007195449 27.999998 10 ACCGAAC 65 7.9347467E-4 26.923077 12 >>END_MODULE