SRR1781216_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781216_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	172109
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCCGT	4262	2.476337669732553	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCCG	416	0.2417072901475228	No Hit
CTTATACACATCTCCGAGCCCACGAGACGACTTAGTACCTCGTATGCCGT	265	0.15397219204109025	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCC	206	0.11969159079420601	No Hit
CTTATACACATCTCCGAGCCCACGAGACGACTTAGTAACTCGTATGCCGT	181	0.10516591229976352	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCTCG	20	7.909507E-5	70.0	36
CGCTACA	25	2.3853096E-4	55.999996	63
CCGTCTT	615	0.0	55.203255	47
CGTCTTC	605	0.0	54.958683	48
TATGCCG	650	0.0	54.923077	43
CGTGCGA	45	2.685556E-8	54.444447	10
CTCGTAT	625	0.0	54.319996	39
CGTATGC	660	0.0	54.090908	41
TCGTATG	645	0.0	53.72093	40
TCTCGTA	580	0.0	53.706898	38
GTATCTC	575	0.0	53.565216	35
GCCGTCT	635	0.0	53.464565	46
ATGCCGT	660	0.0	53.030304	44
GTATGCC	675	0.0	52.88889	42
CTTGAAA	605	0.0	52.64463	57
CGGAATG	20	0.0069420477	52.5	4
GAATCCA	20	0.0069420477	52.5	34
CGAGAAT	40	7.446888E-7	52.5	14
ATCTCGT	600	0.0	51.916668	37
CTGCTTG	630	0.0	51.666668	54