##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781216_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 172109 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.27997373757328 34.0 34.0 34.0 32.0 34.0 2 33.307462131556164 34.0 34.0 34.0 33.0 34.0 3 33.34544968595483 34.0 34.0 34.0 33.0 34.0 4 33.394505807366265 34.0 34.0 34.0 33.0 34.0 5 33.40520251700957 34.0 34.0 34.0 34.0 34.0 6 36.830909481781894 38.0 37.0 38.0 34.0 38.0 7 36.72536590184127 38.0 37.0 38.0 34.0 38.0 8 36.49056702438571 38.0 37.0 38.0 34.0 38.0 9 36.470353090192845 38.0 37.0 38.0 34.0 38.0 10-11 36.37530576553231 38.0 37.0 38.0 34.0 38.0 12-13 36.31490799435242 38.0 37.0 38.0 34.0 38.0 14-15 36.33038365222039 38.0 37.0 38.0 34.0 38.0 16-17 36.25911195811956 38.0 37.0 38.0 34.0 38.0 18-19 36.25896670133462 38.0 37.0 38.0 34.0 38.0 20-21 36.182994497672986 38.0 37.0 38.0 33.5 38.0 22-23 36.26187183703351 38.0 37.0 38.0 34.0 38.0 24-25 36.24836876630508 38.0 37.0 38.0 34.0 38.0 26-27 36.01651279131248 38.0 36.5 38.0 32.0 38.0 28-29 36.01003724383966 38.0 37.0 38.0 32.0 38.0 30-31 36.0018447611688 38.0 37.0 38.0 32.0 38.0 32-33 35.95544393378614 38.0 37.0 38.0 32.0 38.0 34-35 35.97450162397085 38.0 37.0 38.0 32.0 38.0 36-37 35.922752441766555 38.0 36.0 38.0 32.0 38.0 38-39 35.72784688772813 38.0 36.0 38.0 31.0 38.0 40-41 35.857314260149096 38.0 36.0 38.0 31.5 38.0 42-43 35.90403174732292 38.0 36.0 38.0 32.0 38.0 44-45 35.87450685321511 38.0 36.0 38.0 31.0 38.0 46-47 35.901977816383805 38.0 36.5 38.0 31.5 38.0 48-49 35.8711427060758 38.0 36.0 38.0 31.5 38.0 50-51 35.765506161792814 38.0 36.0 38.0 31.0 38.0 52-53 35.773852616655724 38.0 36.0 38.0 31.0 38.0 54-55 35.82392844069747 38.0 36.0 38.0 31.0 38.0 56-57 35.76863789807622 38.0 36.0 38.0 31.0 38.0 58-59 35.73008674735197 38.0 36.0 38.0 31.0 38.0 60-61 35.72677779779094 38.0 36.0 38.0 31.0 38.0 62-63 35.68424370602351 38.0 36.0 38.0 31.0 38.0 64-65 35.64380131195928 38.0 36.0 38.0 31.0 38.0 66-67 35.59561092098612 38.0 36.0 38.0 31.0 38.0 68-69 35.44817818940322 38.0 36.0 38.0 31.0 38.0 70-71 35.24289839578407 38.0 36.0 38.0 28.5 38.0 72-73 35.059703443747864 38.0 36.0 38.0 27.0 38.0 74-75 35.07169293877717 38.0 36.0 38.0 27.0 38.0 76 34.082215340278545 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 0.0 20 2.0 21 10.0 22 32.0 23 55.0 24 149.0 25 280.0 26 546.0 27 957.0 28 1590.0 29 2417.0 30 3761.0 31 5536.0 32 7887.0 33 10920.0 34 14334.0 35 20253.0 36 28906.0 37 74473.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.900719892626185 18.282599980245077 9.955900040090873 28.860780087037863 2 22.349208931549192 19.079769216020082 32.95004909679331 25.620972755637418 3 20.010574693943955 21.116269340940917 29.49003247941711 29.383123485698015 4 14.561121149968914 18.058904531430663 34.431087276086664 32.94888704251376 5 14.407148957927825 33.219064662510384 35.985334874992006 16.38845150456978 6 31.570109639821275 37.88122643208665 16.167080164314477 14.381583763777606 7 29.694554032618864 27.527322801248044 20.447507103056783 22.330616063076306 8 26.10264425451313 35.45020887925675 17.770134042961146 20.677012823268974 9 23.89299804193854 15.242665984928156 19.614314184615562 41.25002178851774 10-11 25.74095486000151 24.94581921921573 26.45009848410019 22.863127436682568 12-13 25.311285290135903 21.62437757467651 26.236861523801775 26.827475611385807 14-15 23.314295010719952 22.691724430448147 21.932031445188805 32.061949113643095 16-17 25.607609131422528 26.83473845063303 23.134757624528643 24.4228947934158 18-19 25.192755753621256 24.9960780668065 24.135286359225837 25.67587982034641 20-21 23.176591578592635 25.01350888099983 24.336612263158813 27.47328727724872 22-23 23.82472735301466 26.03117791632047 24.446716906146687 25.69737782451818 24-25 25.238947411233582 26.189798325479785 24.151555119139616 24.41969914414702 26-27 24.709631686896095 26.626149707452836 24.373507486534695 24.290711119116374 28-29 25.120998901858705 24.70614552405743 25.056504889343383 25.116350684740485 30-31 23.942385348819645 26.115136338018345 24.555950008424894 25.386528304737116 32-33 22.972941566100552 25.060862592891713 27.69117245466536 24.275023386342376 34-35 25.530913548971874 25.82491328169939 25.26887030893213 23.37530286039661 36-37 24.24335740722449 25.51638787047743 26.04308897268591 24.197165749612164 38-39 23.08420826336798 25.098629356977263 26.644161548785945 25.17300083086881 40-41 23.249800998204627 23.763428989768112 27.253077991272974 25.73369202075429 42-43 24.750303586680534 23.736701741338337 26.838515127041585 24.674479544939544 44-45 22.21382960798099 25.572747503035863 27.55172594111871 24.661696947864435 46-47 24.3238296660837 23.33724558274117 26.237733064511442 26.101191686663682 48-49 23.33956969130028 23.448802793578487 26.684252421430603 26.527375093690626 50-51 21.667083069450175 23.67017413383379 28.169648304272293 26.493094492443742 52-53 21.21097676472468 23.565589248673806 30.22968002835412 24.99375395824739 54-55 20.616876514301982 23.89997036761587 28.700126082889334 26.783027035192813 56-57 21.901527520350474 24.020242985549856 27.094748095683553 26.98348139841612 58-59 20.672074092580864 23.82036964946633 29.397358650622568 26.11019760733024 60-61 22.035744789639125 25.174162885148366 26.48089292250841 26.3091994027041 62-63 19.79675670650576 26.96634109779268 26.235699469522224 27.00120272617934 64-65 20.24966736196248 27.35185260503518 25.212510676373697 27.185969356628647 66-67 20.40305852686379 27.269056237616855 24.805501164959416 27.522384070559937 68-69 20.19853697366204 27.70744121457913 24.427252496964133 27.666769314794692 70-71 20.886763620728725 26.950653365018677 24.12221324858084 28.040369765671752 72-73 21.120627044489247 25.394662684694 24.33051147819115 29.154198792625603 74-75 21.15781278143502 25.563451068799424 24.37263594582503 28.906100203940525 76 21.530541691602416 25.439692288026773 24.272408764213377 28.757357256157434 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 1.0 14 3.5 15 10.5 16 19.5 17 24.0 18 33.5 19 54.0 20 78.0 21 91.0 22 112.5 23 194.0 24 335.5 25 417.0 26 516.0 27 679.0 28 874.5 29 1006.0 30 1167.5 31 1488.0 32 2063.0 33 2479.0 34 2742.5 35 3398.0 36 4315.5 37 4841.0 38 5292.0 39 6690.0 40 8655.5 41 10125.0 42 10576.0 43 10850.5 44 10827.0 45 10278.5 46 10028.0 47 9885.0 48 9092.5 49 8098.0 50 7753.0 51 7206.5 52 6097.5 53 5068.5 54 4602.0 55 4258.5 56 3558.0 57 2997.0 58 2793.0 59 2583.0 60 2287.5 61 2150.0 62 2098.0 63 2081.0 64 2109.5 65 2215.0 66 2227.5 67 2180.0 68 2208.5 69 2165.5 70 2145.5 71 2197.0 72 2132.5 73 2023.0 74 1838.5 75 1699.0 76 1570.5 77 1352.5 78 1123.5 79 984.0 80 882.0 81 686.0 82 490.0 83 388.0 84 306.5 85 197.5 86 126.0 87 82.0 88 66.5 89 43.0 90 20.5 91 5.0 92 4.0 93 2.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 172109.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.72107792154972 #Duplication Level Percentage of deduplicated Percentage of total 1 63.5762449817459 28.43198205788192 2 18.918005950447583 16.92067236460615 3 6.930062752536735 9.29759629072274 4 2.8803804128935027 5.152548675548635 5 1.6318257999974015 3.64885043780395 6 1.0484740609855916 2.8133334108036188 7 0.8483935090750822 2.6558750559238624 8 0.6418168353492965 2.2962192564014665 9 0.5092959503176604 2.049863749135722 >10 2.9726253426704257 22.609509090169603 >50 0.03507905780249191 0.9662481334503135 >100 0.00649612181527628 0.6809638078194633 >500 0.0 0.0 >1k 0.0012992243630552559 2.476337669732553 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCCGT 4262 2.476337669732553 No Hit TCTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCCG 416 0.2417072901475228 No Hit CTTATACACATCTCCGAGCCCACGAGACGACTTAGTACCTCGTATGCCGT 265 0.15397219204109025 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCC 206 0.11969159079420601 No Hit CTTATACACATCTCCGAGCCCACGAGACGACTTAGTAACTCGTATGCCGT 181 0.10516591229976352 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.001743081419333097 0.0 9 0.0 0.0 0.0 0.001743081419333097 0.0 10 0.0 0.0 0.0 0.001743081419333097 0.0 11 0.0 0.0 0.0 0.001743081419333097 0.0 12 0.0 0.0 0.0 0.001743081419333097 0.0 13 0.0 0.0 0.0 0.001743081419333097 0.0 14 0.0 0.0 0.0 0.002324108559110796 0.0 15 0.0 0.0 0.0 0.002324108559110796 0.0 16 0.0 0.0 0.0 0.002324108559110796 0.0 17 0.0 0.0 0.0 0.002324108559110796 0.0 18 0.0 0.0 0.0 0.002905135698888495 0.0 19 0.0 0.0 0.0 0.002905135698888495 0.0 20 0.0 0.0 0.0 0.002905135698888495 0.0 21 0.0 0.0 0.0 0.004067189978443893 0.0 22 0.0 0.0 0.0 0.004648217118221592 0.0 23 0.0 0.0 0.0 0.005229244257999291 0.0 24 0.0 0.0 0.0 0.005229244257999291 0.0 25 0.0 0.0 0.0 0.005229244257999291 0.0 26 0.0 0.0 0.0 0.008134379956887787 0.0 27 0.0 0.0 0.0 0.02324108559110796 0.0 28 0.0 0.0 0.0 0.04183395406399433 0.0 29 0.0 0.0 0.0 0.07611455531087857 0.0 30 0.0 0.0 0.0 0.10051769518154192 0.0 31 0.0 0.0 0.0 0.1225967264930945 0.0 32 0.0 0.0 0.0 0.16384965341731111 0.0 33 0.0 0.0 0.0 0.21904723169619253 0.0 34 0.0 0.0 0.0 0.3038771941037366 0.0 35 0.0 0.0 0.0 0.43925651767194046 0.0 36 0.0 0.0 0.0 0.6519124508305782 0.0 37 0.0 0.0 0.0 0.99994770755742 0.0 38 0.0 0.0 0.0 1.3944651354664777 0.0 39 0.0 0.0 0.0 1.8558006844499706 0.0 40 0.0 0.0 0.0 2.420559064313894 0.0 41 0.0 0.0 0.0 2.9917087427153723 0.0 42 0.0 0.0 0.0 3.608178538019511 0.0 43 0.0 0.0 0.0 4.405928800934292 0.0 44 0.0 0.0 0.0 5.248418153611955 0.0 45 0.0 0.0 0.0 6.154820491665165 0.0 46 0.0 0.0 0.0 7.151863063523697 0.0 47 0.0 0.0 0.0 8.167498503855114 0.0 48 0.0 0.0 0.0 9.08029214044588 0.0 49 0.0 0.0 0.0 9.980303179961536 0.0 50 0.0 0.0 0.0 10.855330052466751 0.0 51 0.0 0.0 0.0 11.671673183854418 0.0 52 0.0 0.0 0.0 12.481043989564753 0.0 53 0.0 0.0 0.0 13.303197392350196 0.0 54 0.0 0.0 0.0 14.163117559221192 0.0 55 0.0 0.0 0.0 15.086950711467733 0.0 56 0.0 0.0 0.0 15.979989425306057 0.0 57 0.0 0.0 0.0 16.834099320779274 0.0 58 0.0 0.0 0.0 17.698086677628712 0.0 59 0.0 0.0 0.0 18.52663137895171 0.0 60 0.0 0.0 0.0 19.32728677756538 0.0 61 0.0 0.0 0.0 20.116321633383496 0.0 62 0.0 0.0 0.0 20.870494860814947 0.0 63 0.0 0.0 0.0 21.60549419263374 0.0 64 0.0 0.0 0.0 22.383489532796077 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCTCG 20 7.909507E-5 70.0 36 CGCTACA 25 2.3853096E-4 55.999996 63 CCGTCTT 615 0.0 55.203255 47 CGTCTTC 605 0.0 54.958683 48 TATGCCG 650 0.0 54.923077 43 CGTGCGA 45 2.685556E-8 54.444447 10 CTCGTAT 625 0.0 54.319996 39 CGTATGC 660 0.0 54.090908 41 TCGTATG 645 0.0 53.72093 40 TCTCGTA 580 0.0 53.706898 38 GTATCTC 575 0.0 53.565216 35 GCCGTCT 635 0.0 53.464565 46 ATGCCGT 660 0.0 53.030304 44 GTATGCC 675 0.0 52.88889 42 CTTGAAA 605 0.0 52.64463 57 CGGAATG 20 0.0069420477 52.5 4 GAATCCA 20 0.0069420477 52.5 34 CGAGAAT 40 7.446888E-7 52.5 14 ATCTCGT 600 0.0 51.916668 37 CTGCTTG 630 0.0 51.666668 54 >>END_MODULE