##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781215_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 270506 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.34377795686602 34.0 32.0 34.0 23.0 34.0 2 31.5343541363223 34.0 33.0 34.0 23.0 34.0 3 31.47590441616822 34.0 33.0 34.0 23.0 34.0 4 31.640248275454148 34.0 34.0 34.0 23.0 34.0 5 31.680502465749374 34.0 34.0 34.0 23.0 34.0 6 34.52903447612992 38.0 35.0 38.0 26.0 38.0 7 34.517851729721336 38.0 34.0 38.0 26.0 38.0 8 34.29897303571825 37.0 34.0 38.0 24.0 38.0 9 34.49764885067244 38.0 34.0 38.0 26.0 38.0 10-11 34.406698927195706 38.0 34.0 38.0 25.0 38.0 12-13 34.38142407192447 38.0 34.0 38.0 25.0 38.0 14-15 34.25936762955351 37.5 34.0 38.0 24.0 38.0 16-17 34.22366971527434 37.5 34.0 38.0 24.0 38.0 18-19 34.2925498879877 37.0 34.0 38.0 24.5 38.0 20-21 34.21184742667445 37.0 34.0 38.0 24.0 38.0 22-23 34.280496550908296 37.5 34.0 38.0 24.5 38.0 24-25 34.27876645989368 37.0 34.0 38.0 24.5 38.0 26-27 34.203359629730954 37.0 34.0 38.0 24.0 38.0 28-29 34.28987896756449 37.0 34.0 38.0 24.0 38.0 30-31 34.3643024553984 38.0 34.0 38.0 25.0 38.0 32-33 34.30672887107865 37.5 34.0 38.0 24.5 38.0 34-35 34.33360443021596 37.5 34.0 38.0 24.5 38.0 36-37 34.19580896542036 37.0 34.0 38.0 24.0 38.0 38-39 34.20367015888742 37.0 34.0 38.0 24.0 38.0 40-41 34.20585125653405 37.0 34.0 38.0 24.0 38.0 42-43 34.27736168513822 37.0 34.0 38.0 24.0 38.0 44-45 34.299743813445914 37.0 34.0 38.0 24.5 38.0 46-47 34.29947394882184 37.0 34.0 38.0 24.0 38.0 48-49 34.27100507936977 37.0 34.0 38.0 24.0 38.0 50-51 34.14738305250161 37.0 34.0 38.0 24.0 38.0 52-53 34.22109491101861 37.0 34.0 38.0 24.0 38.0 54-55 34.191193540993545 37.0 34.0 38.0 24.0 38.0 56-57 34.145129867729366 37.0 34.0 38.0 24.0 38.0 58-59 34.14278980872883 37.0 34.0 38.0 24.0 38.0 60-61 34.13976030106541 37.0 34.0 38.0 24.0 38.0 62-63 34.101740811664065 37.0 34.0 38.0 24.0 38.0 64-65 34.118975179848135 37.0 34.0 38.0 24.0 38.0 66-67 34.01406438304511 37.0 34.0 38.0 24.0 38.0 68-69 33.81674713315047 37.0 34.0 38.0 23.5 38.0 70-71 33.96579558309243 37.0 34.0 38.0 23.5 38.0 72-73 33.95872180284356 37.0 34.0 38.0 24.0 38.0 74-75 33.96728723207618 37.0 34.0 38.0 24.0 38.0 76 32.697574175803865 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 6.0 13 36.0 14 103.0 15 304.0 16 645.0 17 1195.0 18 1667.0 19 1900.0 20 1893.0 21 2127.0 22 2240.0 23 2563.0 24 3086.0 25 3795.0 26 4351.0 27 5119.0 28 6077.0 29 7120.0 30 8697.0 31 10470.0 32 12648.0 33 15488.0 34 19478.0 35 26138.0 36 40691.0 37 92669.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.858827530627785 18.229170517474657 9.336576637856462 24.575425314041095 2 23.900394076286663 20.6065669523042 31.13165696879182 24.36138200261732 3 19.54337426896261 22.50227351703844 30.0880571965132 27.866295017485747 4 13.945716546028553 16.86284222900786 37.69676088515597 31.49468033980762 5 13.62964222605044 33.92013485837652 36.38070874583189 16.069514169741154 6 29.251846539448294 37.95442614951239 18.775553961834486 14.018173349204824 7 28.73910375370602 29.84111258160632 22.612807109638972 18.80697655504869 8 25.546198605576215 34.758193903277565 20.103805460877023 19.591802030269196 9 24.811279601931197 16.400005914841074 21.694158355082696 37.09455612814504 10-11 25.083547130193047 24.80018927491442 28.12174221643882 21.99452137845371 12-13 25.245281065854364 22.910952067606633 27.087014705773626 24.75675216076538 14-15 23.332569333027735 24.209444522487487 24.348812965331636 28.109173179153142 16-17 23.562323941058608 27.474806473793556 25.39333693152832 23.56953265361951 18-19 22.90817948585244 27.033226619742262 26.707540683016273 23.351053211389026 20-21 22.960119184047674 27.03877178325065 26.630832587816904 23.370276444884773 22-23 23.35438030949406 26.37575506643106 26.938589162532438 23.331275461542443 24-25 23.000414038875295 26.640813882132004 26.857814614093588 23.500957464899113 26-27 22.127790141438638 27.152447635172607 27.082948252534138 23.636813970854618 28-29 22.692842302943372 26.714010040442727 27.803449831057353 22.789697825556548 30-31 23.125365056597637 26.48296156092656 27.29717640274153 23.094496979734274 32-33 22.57990580615587 27.03821726689981 27.007718867603675 23.374158059340644 34-35 23.371015800019222 26.213281775635288 27.3339593206805 23.081743103664984 36-37 23.471383259521044 26.247476950603684 26.828610086282744 23.452529703592525 38-39 22.658462289191366 26.952636910087023 27.535248756034985 22.853652044686623 40-41 22.908549163419664 26.140085617324573 27.825075968740066 23.1262892505157 42-43 22.587114518716774 26.24618307911839 27.567965220734475 23.59873718143036 44-45 22.133889821297863 26.28222664192291 27.71676044154289 23.867123095236334 46-47 22.29987504898228 26.124559159501082 27.86647985626936 23.709085935247277 48-49 21.861807131819628 26.08833075791295 28.457039769912683 23.592822340354743 50-51 21.936482000399252 26.074837526709203 28.018232497615582 23.970447975275963 52-53 21.585657989101907 25.882235514184526 28.681618892002398 23.85048760471117 54-55 21.22041655268275 26.347105054971053 28.715259550619948 23.717218841726247 56-57 21.096652557254025 26.26217629988355 28.606495258867675 24.03467588399475 58-59 21.412912885159237 26.17770466349975 28.266390639729394 24.142991811611616 60-61 21.20201105340012 26.02391822701983 28.186170311084823 24.587900408495223 62-63 20.633629692611965 25.839818117964548 28.83772943198832 24.688822757435165 64-65 21.411803848357703 26.035932792369827 28.077854383467958 24.47440897580451 66-67 21.5397127594684 25.704330788710006 27.882109387996522 24.873847063825067 68-69 21.04785493798636 25.963660560802943 27.680449529583555 25.30803497162714 70-71 21.638047355871425 25.872165024676068 27.46289347701521 25.026894142437296 72-73 21.593316204876064 25.533354281806254 27.451433430065986 25.421896083251696 74-75 21.91142492745051 25.619304633925438 27.468808339956745 25.00046209866731 76 22.225385019186266 25.344354653870894 27.073336635786266 25.356923691156574 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 1.5 8 3.0 9 2.0 10 1.0 11 1.0 12 1.0 13 2.5 14 15.5 15 32.0 16 61.0 17 85.0 18 104.0 19 179.0 20 294.5 21 354.0 22 416.5 23 610.5 24 898.0 25 1054.0 26 1231.5 27 1687.5 28 2169.0 29 2372.0 30 2805.0 31 3559.5 32 4689.5 33 5498.0 34 5841.0 35 7004.5 36 8709.5 37 9594.0 38 10142.0 39 12050.0 40 14309.0 41 15667.5 42 16127.0 43 16343.0 44 16849.5 45 16938.0 46 16736.0 47 16313.0 48 14956.0 49 13381.5 50 12741.0 51 11943.0 52 10075.0 53 8352.0 54 7699.0 55 7182.0 56 6160.5 57 5113.5 58 4571.0 59 3998.5 60 3155.0 61 2788.0 62 2692.0 63 2532.5 64 2266.0 65 2074.0 66 1962.5 67 1936.0 68 1902.5 69 1817.0 70 1758.5 71 1752.0 72 1719.0 73 1567.5 74 1385.5 75 1322.0 76 1246.0 77 1083.0 78 897.0 79 798.0 80 697.0 81 536.0 82 402.0 83 328.0 84 257.5 85 153.5 86 99.0 87 78.0 88 57.0 89 25.5 90 13.5 91 7.5 92 3.0 93 1.5 94 0.5 95 1.5 96 2.0 97 1.5 98 0.5 99 4.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 3.696775672258656E-4 58-59 3.696775672258656E-4 60-61 3.696775672258656E-4 62-63 3.696775672258656E-4 64-65 3.696775672258656E-4 66-67 3.696775672258656E-4 68-69 3.696775672258656E-4 70-71 3.696775672258656E-4 72-73 3.696775672258656E-4 74-75 3.696775672258656E-4 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 270506.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.22468311053652 #Duplication Level Percentage of deduplicated Percentage of total 1 72.39239911378058 36.35885305101114 2 14.025736193755067 14.088763114466618 3 5.366927865523222 8.086567539690359 4 2.2639442199163216 4.548235241009121 5 1.184450913798889 2.97443359027673 6 0.7334307123714379 2.2101795067434313 7 0.5563621160915575 1.95601776827842 8 0.4433206049920739 1.7812509521678592 9 0.3754162780648576 1.6969647240310082 >10 2.5805729107973194 23.779545143678302 >50 0.07448901106456791 2.3510211620059938 >100 0.002950059844141304 0.16816820664104634 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.696775672258656E-4 0.0 2 0.0 0.0 0.0 3.696775672258656E-4 0.0 3 0.0 0.0 0.0 3.696775672258656E-4 0.0 4 0.0 0.0 0.0 0.0011090327016775967 0.0 5 0.0 0.0 0.0 0.0011090327016775967 0.0 6 0.0 0.0 0.0 0.0011090327016775967 0.0 7 0.0 0.0 0.0 0.0011090327016775967 0.0 8 0.0 0.0 0.0 0.0011090327016775967 0.0 9 0.0 0.0 0.0 0.0011090327016775967 0.0 10 0.0 0.0 0.0 0.0014787102689034625 0.0 11 0.0 0.0 0.0 0.0014787102689034625 0.0 12 0.0 0.0 0.0 0.001848387836129328 0.0 13 0.0 0.0 0.0 0.001848387836129328 0.0 14 0.0 0.0 0.0 0.0022180654033551934 0.0 15 0.0 0.0 0.0 0.0022180654033551934 0.0 16 0.0 0.0 0.0 0.0022180654033551934 0.0 17 0.0 0.0 0.0 0.0022180654033551934 0.0 18 0.0 0.0 0.0 0.0022180654033551934 0.0 19 0.0 0.0 0.0 0.0022180654033551934 0.0 20 0.0 0.0 0.0 0.002587742970581059 0.0 21 0.0 0.0 0.0 0.002587742970581059 0.0 22 0.0 0.0 0.0 0.002587742970581059 0.0 23 0.0 0.0 0.0 0.003696775672258656 0.0 24 0.0 0.0 0.0 0.004066453239484522 0.0 25 0.0 0.0 0.0 0.005175485941162118 0.0 26 0.0 0.0 0.0 0.005545163508387984 0.0 27 0.0 0.0 0.0 0.012199359718453566 0.0 28 0.0 0.0 0.0 0.016635490525163953 0.0 29 0.0 0.0 0.0 0.032161948348650306 0.0 30 0.0 0.0 0.0 0.04805808373936253 0.0 31 0.0 0.0 0.0 0.06321486399562301 0.0 32 0.0 0.0 0.0 0.08650455073085254 0.0 33 0.0 0.0 0.0 0.11570907854169593 0.0 34 0.0 0.0 0.0 0.16080974174325155 0.0 35 0.0 0.0 0.0 0.2236549281716487 0.0 36 0.0 0.0 0.0 0.34638788049063607 0.0 37 0.0 0.0 0.0 0.5145911735784049 0.0 38 0.0 0.0 0.0 0.7171744804181792 0.0 39 0.0 0.0 0.0 0.9877784596275129 0.0 40 0.0 0.0 0.0 1.2672547004502672 0.0 41 0.0 0.0 0.0 1.5873954736678668 0.0 42 0.0 0.0 0.0 1.9319349663223737 0.0 43 0.0 0.0 0.0 2.345604164048117 0.0 44 0.0 0.0 0.0 2.8036346698409647 0.0 45 0.0 0.0 0.0 3.35667231041086 0.0 46 0.0 0.0 0.0 3.9104493061152064 0.0 47 0.0 0.0 0.0 4.534834717159693 0.0 48 0.0 0.0 0.0 5.119294950943787 0.0 49 0.0 0.0 0.0 5.7056035725640095 0.0 50 0.0 0.0 0.0 6.229436685323061 0.0 51 0.0 0.0 0.0 6.754748508351017 0.0 52 0.0 0.0 0.0 7.250116448433676 0.0 53 0.0 0.0 0.0 7.754726327696983 0.0 54 0.0 0.0 0.0 8.302588482325715 0.0 55 0.0 0.0 0.0 8.913295823382846 0.0 56 0.0 0.0 0.0 9.505519286078682 0.0 57 0.0 0.0 0.0 10.101809202014003 0.0 58 0.0 0.0 0.0 10.660761683659512 0.0 59 0.0 0.0 0.0 11.205666417750438 0.0 60 0.0 0.0 0.0 11.74465631076575 0.0 61 0.0 0.0 0.0 12.29177911026003 0.0 62 0.0 0.0 0.0 12.818199965989663 0.0 63 0.0 0.0 0.0 13.325027910656326 0.0 64 0.0 0.0 0.0 13.881022971764027 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTGCCG 20 0.00694632 52.5 64 TACCACG 20 0.00694632 52.5 29 TACTGGC 20 0.00694632 52.5 7 TCGTTCC 40 4.5854482E-5 43.75 62 ACGTTAG 40 4.5854482E-5 43.75 70 GTAAGCG 45 9.18325E-5 38.88889 46 GGCCCGT 50 1.7070342E-4 35.000004 52 TATACCG 50 1.7070342E-4 35.000004 6 CCTGTGC 60 1.213117E-5 35.0 8 AAATTCG 40 0.002416175 35.0 30 TAAGCGC 65 2.0981144E-5 32.307693 47 CTCGTTC 55 2.9874506E-4 31.81818 61 ATTAGAG 55 2.9874506E-4 31.81818 3 CCACGTA 55 2.9874506E-4 31.81818 60 GCACCGA 45 0.0043026954 31.111113 10 TAACCGG 45 0.0043026954 31.111113 22 ATTATCG 45 0.0043026954 31.111113 48 ATTACAC 60 4.974343E-4 29.166666 3 ACTGTGC 60 4.974343E-4 29.166666 8 CACGTAA 60 4.974343E-4 29.166666 61 >>END_MODULE