##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781214_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 171844 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.000785596238448 34.0 32.0 34.0 21.0 34.0 2 31.118462093526688 34.0 32.0 34.0 23.0 34.0 3 31.098251902888666 34.0 32.0 34.0 23.0 34.0 4 31.25423640045623 34.0 33.0 34.0 23.0 34.0 5 31.221031866111122 34.0 33.0 34.0 23.0 34.0 6 33.99477433020647 37.0 34.0 38.0 23.0 38.0 7 33.824317404157256 37.0 34.0 38.0 23.0 38.0 8 33.699890598449755 37.0 34.0 38.0 22.0 38.0 9 34.030341472498314 37.0 34.0 38.0 24.0 38.0 10-11 33.86223842554875 37.0 34.0 38.0 23.0 38.0 12-13 33.833401224366284 37.0 34.0 38.0 23.0 38.0 14-15 33.717432671492745 37.0 34.0 38.0 22.0 38.0 16-17 33.69348071506715 37.0 34.0 38.0 22.0 38.0 18-19 33.72556504736855 37.0 34.0 38.0 22.0 38.0 20-21 33.664774446591096 37.0 34.0 38.0 22.0 38.0 22-23 33.74222550685505 37.0 34.0 38.0 22.5 38.0 24-25 33.72905658620609 37.0 34.0 38.0 22.5 38.0 26-27 33.65916761714113 37.0 34.0 38.0 22.0 38.0 28-29 33.75240043295082 37.0 34.0 38.0 22.5 38.0 30-31 33.81706082260655 37.0 34.0 38.0 23.0 38.0 32-33 33.75375049463467 37.0 34.0 38.0 22.5 38.0 34-35 33.795087404855565 37.0 34.0 38.0 23.0 38.0 36-37 33.668664602779266 37.0 34.0 38.0 22.0 38.0 38-39 33.67960766741929 37.0 34.0 38.0 22.0 38.0 40-41 33.65626963990596 37.0 34.0 38.0 22.0 38.0 42-43 33.740988920183426 37.0 34.0 38.0 22.5 38.0 44-45 33.77895940504178 37.0 34.0 38.0 23.0 38.0 46-47 33.75183887712111 37.0 34.0 38.0 22.5 38.0 48-49 33.72640592630525 37.0 34.0 38.0 22.5 38.0 50-51 33.605589953678916 37.0 34.0 38.0 22.0 38.0 52-53 33.67127743767603 37.0 34.0 38.0 22.0 38.0 54-55 33.62408638067084 37.0 34.0 38.0 22.0 38.0 56-57 33.59801040478574 37.0 34.0 38.0 22.0 38.0 58-59 33.57965945857871 37.0 34.0 38.0 22.0 38.0 60-61 33.56697062451991 37.0 34.0 38.0 22.0 38.0 62-63 33.544770256744485 37.0 34.0 38.0 21.5 38.0 64-65 33.58175438188124 37.0 34.0 38.0 22.0 38.0 66-67 33.45875910709714 37.0 34.0 38.0 21.5 38.0 68-69 33.24762575359047 37.0 33.5 38.0 21.0 38.0 70-71 33.381305137217474 37.0 34.0 38.0 21.0 38.0 72-73 33.37665557133214 37.0 33.5 38.0 21.0 38.0 74-75 33.405454947510535 37.0 33.0 38.0 21.5 38.0 76 32.143112357719794 37.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 34.0 14 147.0 15 382.0 16 775.0 17 1414.0 18 1650.0 19 1795.0 20 1710.0 21 1772.0 22 1823.0 23 2005.0 24 2314.0 25 2646.0 26 2998.0 27 3609.0 28 4078.0 29 4773.0 30 5569.0 31 6651.0 32 8010.0 33 9902.0 34 12507.0 35 16335.0 36 24969.0 37 53972.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.25932822792766 20.06121831428505 9.625590651986686 26.05386280580061 2 21.11275342752729 19.695770582621446 34.46439794231978 24.72707804753148 3 19.58927864807616 22.65601359372454 29.250366611577945 28.504341146621353 4 13.682176858080586 15.945857871092386 37.315821326319224 33.05614394450781 5 13.543679150857754 34.970089150624986 36.007076185377436 15.479155513139824 6 30.996717953492702 37.53637019622448 16.969460673634227 14.497451176648587 7 28.61432462000419 28.688810781871933 22.300458555434 20.396406042689883 8 24.963338842205722 35.638718838015876 19.281441307232143 20.116501012546262 9 24.460557249598473 14.184376527548242 21.68245618118759 39.6726100416657 10-11 25.32122157305463 24.64357207700007 27.79526780102884 22.23993854891646 12-13 24.68605246619027 22.76221456670003 27.650077977700704 24.901654989409 14-15 22.900421312353064 24.3319522357487 24.53737110402458 28.23025534787365 16-17 23.39563790414562 27.295686785689345 25.328495612299527 23.980179697865506 18-19 22.826808035194713 26.79785153976863 26.64567863876539 23.72966178627127 20-21 22.90129419706245 26.89532366565024 26.665173063941715 23.53820907334559 22-23 23.06394171457834 26.287795907916482 26.918309629664115 23.729952747841065 24-25 22.987709783291823 26.717837108074765 26.356462838388307 23.937990270245106 26-27 22.35283163799725 26.743732687786597 27.078047531482042 23.82538814273411 28-29 22.794220339377574 26.52929401084705 27.584611624496635 23.09187402527874 30-31 23.08925537115058 26.654116524289474 26.72394730104048 23.532680803519472 32-33 22.54573915877191 26.770501152207814 27.156025232187332 23.527734456832942 34-35 23.39447405786644 26.04106049672959 27.22381927794977 23.340646167454203 36-37 23.21844230813994 26.206908591513233 26.7646819208119 23.809967179534926 38-39 22.34032029049603 26.596506133469894 27.78799376178394 23.275179814250134 40-41 22.90769535159796 26.0334954959149 27.805451455971696 23.253357696515444 42-43 22.65601359372454 26.014582993878165 27.548532389841952 23.780871022555342 44-45 22.086892763203835 26.00090780009776 27.8613160773725 24.0508833593259 46-47 22.100276995414443 25.967738181141037 27.935511277670443 23.996473545774073 48-49 21.802914271083075 26.04600684341612 28.452840948767488 23.698237936733317 50-51 21.73570214846023 26.15569935522916 28.037056865529202 24.071541630781407 52-53 21.6746002188031 26.00410837736552 28.49328460696911 23.82800679686227 54-55 21.292567677661133 26.352098414841368 28.112415912106332 24.24291799539117 56-57 21.149414585321573 26.358790530946674 28.235201694560182 24.256593189171575 58-59 21.373454994064385 26.023311840972045 28.212506692116108 24.390726472847465 60-61 21.466271734829263 25.79636181653127 28.215416307814063 24.5219501408254 62-63 20.971346104606504 25.971229719978584 28.42956402318382 24.627860152231094 64-65 21.560252321873328 26.04106049672959 27.8543329996974 24.54435418169968 66-67 21.429028653895394 26.06666511487163 27.516235655594606 24.988070575638368 68-69 21.397022881217847 26.00905472405205 27.45920718791462 25.134715206815482 70-71 21.793603500849606 25.936605293172875 27.66666278717907 24.603128418798445 72-73 21.446777309652944 25.69452526710272 27.522054886990528 25.336642536253812 74-75 21.980691790228345 25.84698912967575 27.438548916459116 24.733770163636787 76 22.150904308558925 25.63778776099253 27.122855613230605 25.08845231721794 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 5.0 14 17.5 15 33.5 16 72.5 17 103.0 18 130.5 19 200.5 20 271.0 21 299.0 22 389.0 23 575.5 24 775.5 25 879.0 26 1073.0 27 1342.0 28 1669.0 29 1921.0 30 2120.5 31 2609.0 32 3346.0 33 3794.0 34 4094.0 35 4791.0 36 5808.0 37 6428.0 38 6668.0 39 7496.5 40 8612.5 41 9369.0 42 9598.0 43 9726.5 44 9737.5 45 9601.0 46 9582.0 47 9403.5 48 8676.0 49 7758.0 50 7389.0 51 6923.5 52 5830.5 53 5071.5 54 4940.0 55 4566.5 56 3912.0 57 3352.0 58 3073.0 59 2774.5 60 2296.5 61 1974.0 62 1831.0 63 1735.0 64 1675.0 65 1612.5 66 1488.5 67 1463.0 68 1500.0 69 1448.5 70 1337.0 71 1314.0 72 1258.0 73 1211.5 74 1157.0 75 1093.0 76 1050.5 77 904.0 78 669.0 79 538.0 80 491.0 81 401.5 82 302.0 83 245.0 84 205.0 85 135.5 86 78.5 87 51.0 88 42.5 89 28.5 90 18.5 91 10.0 92 6.0 93 3.5 94 1.5 95 2.0 96 2.0 97 1.0 98 0.5 99 2.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 171844.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.31880798862282 #Duplication Level Percentage of deduplicated Percentage of total 1 74.01266880629971 43.90343289646428 2 14.402935549391795 17.087299366537636 3 5.3434158929410565 9.508951840701782 4 2.1009981186793403 4.985148159455903 5 0.9899957240257021 2.936268313151913 6 0.614997252156767 2.1888542348530753 7 0.442998017791948 1.8394680049718755 8 0.3419984696212576 1.6229553241492989 9 0.2989986620336416 1.5962619799825841 >10 1.4479935204831906 14.218654648889398 >50 0.0029999865755867103 0.1127052308422603 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 5.819231395917228E-4 0.0 6 0.0 0.0 0.0 5.819231395917228E-4 0.0 7 0.0 0.0 0.0 5.819231395917228E-4 0.0 8 0.0 0.0 0.0 0.001745769418775168 0.0 9 0.0 0.0 0.0 0.002327692558366891 0.0 10 0.0 0.0 0.0 0.003491538837550336 0.0 11 0.0 0.0 0.0 0.003491538837550336 0.0 12 0.0 0.0 0.0 0.003491538837550336 0.0 13 0.0 0.0 0.0 0.004073461977142059 0.0 14 0.0 0.0 0.0 0.004655385116733782 0.0 15 0.0 0.0 0.0 0.004655385116733782 5.819231395917228E-4 16 0.0 0.0 0.0 0.004655385116733782 5.819231395917228E-4 17 0.0 0.0 0.0 0.005819231395917227 5.819231395917228E-4 18 0.0 0.0 0.0 0.008146923954284117 5.819231395917228E-4 19 0.0 0.0 0.0 0.00872884709387584 5.819231395917228E-4 20 0.0 0.0 0.0 0.009310770233467564 5.819231395917228E-4 21 0.0 0.0 0.0 0.009892693373059286 5.819231395917228E-4 22 0.0 0.0 0.0 0.012220385931426178 5.819231395917228E-4 23 0.0 0.0 0.0 0.0128023090710179 5.819231395917228E-4 24 0.0 0.0 0.0 0.01745769418775168 5.819231395917228E-4 25 0.0 0.0 0.0 0.01745769418775168 5.819231395917228E-4 26 0.0 0.0 0.0 0.01745769418775168 5.819231395917228E-4 27 0.0 0.0 0.0 0.022113079304485462 5.819231395917228E-4 28 0.0 0.0 0.0 0.03200577267754475 5.819231395917228E-4 29 0.0 0.0 0.0 0.044226158608970924 5.819231395917228E-4 30 0.0 0.0 0.0 0.06284769907590605 5.819231395917228E-4 31 0.0 0.0 0.0 0.08903424035753357 5.819231395917228E-4 32 0.0 0.0 0.0 0.11056539652242732 5.819231395917228E-4 33 0.0 0.0 0.0 0.14431693861874723 5.819231395917228E-4 34 0.0 0.0 0.0 0.1995996368799609 5.819231395917228E-4 35 0.0 0.0 0.0 0.2787411838644352 5.819231395917228E-4 36 0.0 0.0 0.0 0.39570773492237143 5.819231395917228E-4 37 0.0 0.0 0.0 0.5830869858709061 5.819231395917228E-4 38 0.0 0.0 0.0 0.7972347012406601 5.819231395917228E-4 39 0.0 0.0 0.0 1.0503712669630596 5.819231395917228E-4 40 0.0 0.0 0.0 1.3139824491981098 5.819231395917228E-4 41 0.0 0.0 0.0 1.5793394008519355 5.819231395917228E-4 42 0.0 0.0 0.0 1.8883405879751403 5.819231395917228E-4 43 0.0 0.0 0.0 2.269500244407719 5.819231395917228E-4 44 0.0 0.0 0.0 2.694886059449268 5.819231395917228E-4 45 0.0 0.0 0.0 3.154605339726729 5.819231395917228E-4 46 0.0 0.0 0.0 3.6672796257070366 5.819231395917228E-4 47 0.0 0.0 0.0 4.149693908428575 5.819231395917228E-4 48 0.0 0.0 0.0 4.642582807662764 5.819231395917228E-4 49 0.0 0.0 0.0 5.1069574730569585 5.819231395917228E-4 50 0.0 0.0 0.0 5.513721747631573 5.819231395917228E-4 51 0.0 0.0 0.0 5.924559484183329 5.819231395917228E-4 52 0.0 0.0 0.0 6.353436838062429 5.819231395917228E-4 53 0.0 0.0 0.0 6.793952654733363 5.819231395917228E-4 54 0.0 0.0 0.0 7.233304625125114 5.819231395917228E-4 55 0.0 0.0 0.0 7.761108912734806 0.0011638462791834455 56 0.0 0.0 0.0 8.258071273946138 0.0011638462791834455 57 0.0 0.0 0.0 8.710807476548498 0.0011638462791834455 58 0.0 0.0 0.0 9.168780987407184 0.0011638462791834455 59 0.0 0.0 0.0 9.611624496636484 0.0011638462791834455 60 0.0 0.0 0.0 10.061451083540886 0.0011638462791834455 61 0.0 0.0 0.0 10.492656129978352 0.0011638462791834455 62 0.0 0.0 0.0 10.945392332580713 0.0011638462791834455 63 0.0 0.0 0.0 11.37310584018063 0.0011638462791834455 64 0.0 0.0 0.0 11.774632806498918 0.0011638462791834455 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTACC 20 0.0069420286 52.499996 14 TCTACGC 20 0.0069420286 52.499996 3 AATTGCC 50 3.4635686E-6 42.000004 29 ATTGCCC 50 1.704446E-4 35.000004 30 GAGACAT 40 0.0024137301 34.999996 25 ACTGTAG 40 0.0024137301 34.999996 8 GTGTTTC 45 0.004298367 31.111109 45 GGCCAAG 45 0.004298367 31.111109 33 AGCTCGG 45 0.004298367 31.111109 43 TAGTATC 45 0.004298367 31.111109 41 GTGCTGA 60 4.9668754E-4 29.166668 1 CTAGGGA 60 4.9668754E-4 29.166668 4 TAGAGCA 50 0.0071935765 28.000002 4 CACGAAA 50 0.0071935765 28.000002 29 GTAATCA 50 0.0071935765 28.000002 56 ACAAGTT 50 0.0071935765 28.000002 37 GGGTTAT 65 7.9316634E-4 26.923077 1 GTAGCTC 70 0.0012223118 25.0 9 GGAGTAA 75 0.0018267214 23.333334 53 GGTGCTC 75 0.0018267214 23.333334 8 >>END_MODULE