##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781213_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 167530 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.16394675580493 34.0 32.0 34.0 21.0 34.0 2 31.314063152868144 34.0 33.0 34.0 23.0 34.0 3 31.23790365904614 34.0 33.0 34.0 23.0 34.0 4 31.410105652718915 34.0 33.0 34.0 23.0 34.0 5 31.433020951471377 34.0 33.0 34.0 23.0 34.0 6 34.21419447263177 37.0 34.0 38.0 24.0 38.0 7 34.17906643586223 37.0 34.0 38.0 24.0 38.0 8 34.04294156270519 37.0 34.0 38.0 24.0 38.0 9 34.26687757416582 37.0 34.0 38.0 24.0 38.0 10-11 34.13233749179251 37.0 34.0 38.0 24.0 38.0 12-13 34.07192144690503 37.0 34.0 38.0 23.0 38.0 14-15 33.93544141347819 37.0 34.0 38.0 23.0 38.0 16-17 33.894383095564976 37.0 34.0 38.0 23.0 38.0 18-19 33.96414970453053 37.0 34.0 38.0 23.0 38.0 20-21 33.892747567599834 37.0 34.0 38.0 23.0 38.0 22-23 33.94869874052408 37.0 34.0 38.0 23.0 38.0 24-25 33.940243538470725 37.0 34.0 38.0 23.0 38.0 26-27 33.84517101414672 37.0 34.0 38.0 23.0 38.0 28-29 33.95063272249746 37.0 34.0 38.0 23.0 38.0 30-31 34.002163791559724 37.0 34.0 38.0 23.0 38.0 32-33 33.95009550528263 37.0 34.0 38.0 23.0 38.0 34-35 33.97430310989077 37.0 34.0 38.0 23.0 38.0 36-37 33.82217811735212 37.0 34.0 38.0 22.5 38.0 38-39 33.84490837461947 37.0 34.0 38.0 23.0 38.0 40-41 33.842258103026325 37.0 34.0 38.0 23.0 38.0 42-43 33.92237808153763 37.0 34.0 38.0 23.0 38.0 44-45 33.95173998686802 37.0 34.0 38.0 23.0 38.0 46-47 33.922491494060765 37.0 34.0 38.0 23.0 38.0 48-49 33.884202829344 37.0 34.0 38.0 23.0 38.0 50-51 33.77048289858533 37.0 34.0 38.0 22.5 38.0 52-53 33.88105115501701 37.0 34.0 38.0 23.0 38.0 54-55 33.82459857935892 37.0 34.0 38.0 23.0 38.0 56-57 33.80439921208142 37.0 34.0 38.0 23.0 38.0 58-59 33.79841819375635 37.0 34.0 38.0 23.0 38.0 60-61 33.776732525517815 37.0 34.0 38.0 23.0 38.0 62-63 33.73442666985018 37.0 34.0 38.0 22.5 38.0 64-65 33.74359517698323 37.0 34.0 38.0 23.0 38.0 66-67 33.65728526234108 37.0 34.0 38.0 22.0 38.0 68-69 33.42405240852385 37.0 34.0 38.0 21.5 38.0 70-71 33.56499134483376 37.0 34.0 38.0 22.0 38.0 72-73 33.50916253805289 37.0 34.0 38.0 22.0 38.0 74-75 33.51339760042977 37.0 34.0 38.0 22.0 38.0 76 32.132728466543306 36.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 6.0 13 31.0 14 110.0 15 330.0 16 824.0 17 1331.0 18 1724.0 19 1790.0 20 1620.0 21 1452.0 22 1476.0 23 1613.0 24 1818.0 25 2230.0 26 2559.0 27 3083.0 28 3750.0 29 4389.0 30 5364.0 31 6469.0 32 7898.0 33 9831.0 34 12248.0 35 16694.0 36 24935.0 37 53954.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.05163254342506 18.883782009192384 10.26502715931475 25.799558288067807 2 22.706380946696115 20.010147436280068 32.00382021130544 25.27965140571838 3 19.662746970691817 22.110069838237926 29.19715871784158 29.03002447322868 4 14.07747866053841 16.413776637020234 37.208858114964485 32.29988658747687 5 13.625619292067093 34.50426789231779 35.988778129290274 15.881334686324838 6 30.19459201337074 36.93845878350146 18.048110786127857 14.818838416999942 7 29.12194830776577 28.72201993672775 22.484928072584015 19.67110368292246 8 25.90640482301677 33.454306691338864 19.856145168029606 20.783143317614755 9 24.564555601981734 15.357249447860086 21.839670506774905 38.23852444338328 10-11 25.37664895839551 24.281621202172747 27.907240494239836 22.434489345191906 12-13 25.256371993075867 22.829343998089893 26.374679161941145 25.539604846893095 14-15 23.40565868799618 24.004357428520265 23.966155315465887 28.623828568017668 16-17 23.762609681848026 26.462126186354684 25.447084104339524 24.32818002745777 18-19 23.16779084343103 26.103086014445175 26.58986450188026 24.13925864024354 20-21 23.241807437473884 26.431683877514473 26.39527248850952 23.93123619650212 22-23 23.407449412045604 25.746433474601567 26.826836984420698 24.019280128932134 24-25 23.172864561571064 26.07144988957202 26.460932370321732 24.29475317853519 26-27 22.62639527248851 26.22097534769892 26.652241389601862 24.500387990210708 28-29 23.115262937981257 26.08816331403331 27.443442965439026 23.353130782546412 30-31 23.443263893034082 25.87566406016833 26.728048707694146 23.953023339103442 32-33 22.8397898883782 26.54927475675998 26.518533993911536 24.092401360950277 34-35 23.842296902047394 25.474541873097355 26.912194830776574 23.77096639407867 36-37 23.604429057482243 25.35545872381066 26.638512505222945 24.401599713484153 38-39 23.00095505282636 25.989076583298516 27.20945502298096 23.80051334089417 40-41 23.310153405360236 24.80779561869516 27.91141885035516 23.970632125589447 42-43 22.54909568435504 25.308601444517397 27.6407210648839 24.501581806243657 44-45 22.17095445591834 25.087148570405297 27.74816450784934 24.993732465827016 46-47 22.61863546827434 24.72154241031457 27.95767922163195 24.702142899779144 48-49 21.870411269623354 24.60066853697845 28.95869396525995 24.570226228138246 50-51 21.72655643765296 24.62693248970334 28.454306691338864 25.19220438130484 52-53 21.33707395690324 24.589327284665433 29.05121470781353 25.022384050617802 54-55 20.665850892377485 25.237867844565155 28.916015042082016 25.18026622097535 56-57 20.47675327853685 25.21563430808994 28.807251281867618 25.50036113150559 58-59 20.8050546472551 25.005819887900003 28.427913973103163 25.761211491741726 60-61 20.505703490142004 24.54769025064317 28.75561843024193 26.190987828972894 62-63 20.187549618275042 24.45636277898155 29.21732953697569 26.13875806576772 64-65 21.07217257907586 24.599920013848347 28.36881972673388 25.959087680341913 66-67 21.09276602856819 24.45785505793027 27.610742020784464 26.838636892717084 68-69 20.78028281670636 24.84256457091011 27.19379928251228 27.183353329871245 70-71 21.460165105742888 24.699007336043312 27.120976069814777 26.719851488399023 72-73 21.46822341206597 24.002709978570874 27.08008762661987 27.448978982743288 74-75 21.63051880415091 24.363768769082462 27.037626209115412 26.968086217651223 76 22.065301737002326 24.09777353309855 26.489583955112515 27.347340774786606 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.0 12 2.0 13 3.5 14 10.0 15 20.0 16 29.0 17 33.0 18 38.0 19 58.0 20 90.5 21 108.0 22 139.0 23 254.0 24 379.5 25 421.0 26 560.0 27 735.5 28 929.5 29 1087.0 30 1315.0 31 1714.5 32 2326.5 33 2767.0 34 3068.5 35 3719.0 36 4811.0 37 5554.0 38 6047.5 39 7216.0 40 8523.5 41 9623.5 42 10091.0 43 10192.0 44 10408.0 45 10652.5 46 10782.0 47 10500.5 48 9645.5 49 8703.5 50 8335.0 51 7743.5 52 6462.0 53 5284.0 54 4796.0 55 4510.0 56 3779.0 57 2975.5 58 2617.0 59 2422.5 60 2070.5 61 1882.0 62 1851.0 63 1698.0 64 1560.5 65 1606.0 66 1618.5 67 1601.0 68 1525.0 69 1430.5 70 1362.5 71 1313.0 72 1271.0 73 1150.0 74 1083.0 75 1095.0 76 1015.5 77 869.0 78 715.0 79 628.0 80 548.5 81 403.0 82 301.5 83 266.0 84 223.5 85 133.0 86 68.0 87 51.0 88 42.0 89 25.0 90 15.5 91 10.0 92 6.0 93 4.0 94 1.0 95 0.5 96 1.0 97 0.5 98 0.5 99 3.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 5.969080164746613E-4 58-59 5.969080164746613E-4 60-61 5.969080164746613E-4 62-63 5.969080164746613E-4 64-65 5.969080164746613E-4 66-67 5.969080164746613E-4 68-69 5.969080164746613E-4 70-71 5.969080164746613E-4 72-73 5.969080164746613E-4 74-75 2.9845400823733066E-4 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 167530.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.04440995642572 #Duplication Level Percentage of deduplicated Percentage of total 1 72.31104484459226 37.633856622694445 2 13.499254501663035 14.051214707813525 3 5.422640211033376 8.466543305676595 4 2.439499942653974 5.0784934041664185 5 1.4439729326757655 3.757535963707993 6 0.8854226402110335 2.764877932310631 7 0.6663608211950912 2.4276249030024473 8 0.509232710173185 2.120217274517997 9 0.40830370455327447 1.9124932847848146 >10 2.390182360362427 21.041604488748284 >50 0.02408533088656956 0.745538112576852 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0011938160329493224 0.0 2 0.0 0.0 0.0 0.0017907240494239838 0.0 3 0.0 0.0 0.0 0.0017907240494239838 0.0 4 0.0 0.0 0.0 0.0035814480988479677 0.0 5 0.0 0.0 0.0 0.0035814480988479677 0.0 6 0.0 0.0 0.0 0.0035814480988479677 0.0 7 0.0 0.0 0.0 0.0035814480988479677 0.0 8 0.0 0.0 0.0 0.0035814480988479677 0.0 9 0.0 0.0 0.0 0.005372172148271952 0.0 10 0.0 0.0 0.0 0.005969080164746613 0.0 11 0.0 0.0 0.0 0.005969080164746613 0.0 12 0.0 0.0 0.0 0.005969080164746613 0.0 13 0.0 0.0 0.0 0.006565988181221274 0.0 14 0.0 0.0 0.0 0.007162896197695935 0.0 15 0.0 0.0 0.0 0.0077598042141705965 0.0 16 0.0 0.0 0.0 0.0077598042141705965 0.0 17 0.0 0.0 0.0 0.008356712230645257 0.0 18 0.0 0.0 0.0 0.008953620247119919 0.0 19 0.0 0.0 0.0 0.010147436280069241 0.0 20 0.0 0.0 0.0 0.010744344296543903 0.0 21 0.0 0.0 0.0 0.013131976362442548 0.0 22 0.0 0.0 0.0 0.016116516444815855 0.0 23 0.0 0.0 0.0 0.017310332477765176 0.0 24 0.0 0.0 0.0 0.01969796454366382 0.0 25 0.0 0.0 0.0 0.01969796454366382 0.0 26 0.0 0.0 0.0 0.01969796454366382 0.0 27 0.0 0.0 0.0 0.027457768757834417 0.0 28 0.0 0.0 0.0 0.04476810123559959 0.0 29 0.0 0.0 0.0 0.06207843371336477 0.0 30 0.0 0.0 0.0 0.08117949024055393 0.0 31 0.0 0.0 0.0 0.0984898227183191 0.0 32 0.0 0.0 0.0 0.1265444994926282 0.0 33 0.0 0.0 0.0 0.1725064167611771 0.0 34 0.0 0.0 0.0 0.2530889989852564 0.0 35 0.0 0.0 0.0 0.3497880976541515 0.0 36 0.0 0.0 0.0 0.5109532621023101 0.0 37 0.0 0.0 0.0 0.7915000298454008 0.0 38 0.0 0.0 0.0 1.1532262878290456 0.0 39 0.0 0.0 0.0 1.5352474183728289 0.0 40 0.0 0.0 0.0 1.9680057303169582 0.0 41 0.0 0.0 0.0 2.428221811018922 0.0 42 0.0 0.0 0.0 2.966035933862592 0.0 43 0.0 0.0 0.0 3.611890407688175 0.0 44 0.0 0.0 0.0 4.337730555721364 0.0 45 0.0 0.0 0.0 5.248015280845221 0.0 46 0.0 0.0 0.0 6.215006267534173 0.0 47 0.0 0.0 0.0 7.2303468035575715 0.0 48 0.0 0.0 0.0 8.174655285620485 0.0 49 0.0 0.0 0.0 9.07538948248075 0.0 50 0.0 0.0 0.0 9.897331821166357 0.0 51 0.0 0.0 0.0 10.6619709902704 0.0 52 0.0 0.0 0.0 11.427207067390915 0.0 53 0.0 0.0 0.0 12.269444278636662 0.0 54 0.0 0.0 0.0 13.078254640959829 0.0 55 0.0 0.0 0.0 14.044648719632304 0.0 56 0.0 0.0 0.0 15.011639706321256 0.0 57 0.0 0.0 0.0 15.97624306094431 0.0 58 0.0 0.0 0.0 16.858473109293858 0.0 59 0.0 0.0 0.0 17.72578045723154 0.0 60 0.0 0.0 0.0 18.583537276905627 0.0 61 0.0 0.0 0.0 19.38697546708052 0.0 62 0.0 0.0 0.0 20.079985674207606 0.0 63 0.0 0.0 0.0 20.855966095624666 0.0 64 0.0 0.0 0.0 21.66955172207963 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTTAGC 15 0.0022215787 70.0 1 GTCTATG 20 0.0069417255 52.5 2 GATCTAG 20 0.0069417255 52.5 22 CGGTAAG 20 0.0069417255 52.5 28 TCGAAAT 30 5.8649515E-4 46.666664 70 CGTTCGG 35 0.0012527003 40.0 24 TTGCGTT 35 0.0012527003 40.0 33 TACGTAC 35 0.0012527003 40.0 41 AGCGGTC 45 9.168274E-5 38.88889 12 TACTGGC 45 9.168274E-5 38.88889 7 CGGTCAA 50 1.7042641E-4 35.000004 14 TGATACT 40 0.0024135576 35.0 4 CACCTTG 40 0.0024135576 35.0 12 ATACTGG 60 1.2103641E-5 35.0 6 GCATTAG 40 0.0024135576 35.0 34 GAGCGGT 55 2.9826272E-4 31.81818 11 CGTTCAG 45 0.004298062 31.111113 36 CTAGGGA 45 0.004298062 31.111113 4 CGCCGAA 60 4.966351E-4 29.166666 66 TAGCGGC 50 0.0071930704 28.000002 7 >>END_MODULE