SRR1781213_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781213_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	151354
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGT	4462	2.948055551884985	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCG	456	0.3012804418779814	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCC	291	0.19226449251423813	No Hit
CTTATACACATCTCCGAGCCCACGAGACCAATCTTAACCTCGTATGCCGT	260	0.17178270808832274	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAAGC	20	7.906429E-5	70.0	33
CAATACG	15	0.0022211634	70.0	69
CTCGTAA	30	8.345132E-6	58.333332	30
CGTAAGA	30	8.345132E-6	58.333332	32
TCTTAAG	25	2.3843863E-4	56.000004	32
GGTTATC	25	2.3843863E-4	56.000004	7
TCTCGTA	570	0.0	55.26316	38
CTCGTAT	680	0.0	55.073524	39
GTATGCC	710	0.0	54.71831	42
ATCTCGT	570	0.0	54.649124	37
CGTATGC	705	0.0	54.60993	41
TCGTATG	705	0.0	54.60993	40
TATGCCG	720	0.0	54.444447	43
CCGTCTT	695	0.0	54.38849	47
AATCTCG	575	0.0	54.173912	36
GTCTTCT	705	0.0	54.113472	49
CGTCTTC	700	0.0	54.000004	48
TCTTCTG	710	0.0	53.732395	50
GCCGTCT	725	0.0	53.10345	46
ATGCCGT	735	0.0	52.85714	44