##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781212_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 245933 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.647310446341077 34.0 33.0 34.0 24.0 34.0 2 31.712572123301875 34.0 34.0 34.0 24.0 34.0 3 31.615505035924418 34.0 34.0 34.0 23.0 34.0 4 31.80165329581634 34.0 34.0 34.0 23.0 34.0 5 31.848466858859933 34.0 34.0 34.0 27.0 34.0 6 34.80914720675956 38.0 35.0 38.0 27.0 38.0 7 34.63772246912777 38.0 35.0 38.0 26.0 38.0 8 34.417821113880606 37.0 34.0 38.0 25.0 38.0 9 34.75002134727751 38.0 35.0 38.0 27.0 38.0 10-11 34.61132706875449 38.0 35.0 38.0 26.0 38.0 12-13 34.56772169655963 38.0 35.0 38.0 26.0 38.0 14-15 34.457506719309734 38.0 34.0 38.0 25.5 38.0 16-17 34.44759141717459 37.5 34.0 38.0 25.5 38.0 18-19 34.501837898939954 38.0 34.0 38.0 26.0 38.0 20-21 34.428317875193656 37.5 34.0 38.0 25.5 38.0 22-23 34.512041897589995 38.0 34.5 38.0 25.5 38.0 24-25 34.478760475414035 37.5 34.0 38.0 25.5 38.0 26-27 34.42734809887246 38.0 34.0 38.0 25.5 38.0 28-29 34.519692355234966 38.0 34.0 38.0 26.0 38.0 30-31 34.5889571549975 38.0 35.0 38.0 26.0 38.0 32-33 34.54204600439957 38.0 34.5 38.0 26.0 38.0 34-35 34.561368340157685 38.0 34.5 38.0 26.0 38.0 36-37 34.4137732634498 37.5 34.0 38.0 24.5 38.0 38-39 34.428834276002 37.0 34.0 38.0 25.0 38.0 40-41 34.421814071312106 37.0 34.0 38.0 25.0 38.0 42-43 34.48967198383299 37.5 34.0 38.0 25.5 38.0 44-45 34.515609942545325 37.5 34.5 38.0 25.5 38.0 46-47 34.51252170306547 37.5 34.5 38.0 25.5 38.0 48-49 34.46518157384328 37.0 34.0 38.0 25.0 38.0 50-51 34.34320729629614 37.0 34.0 38.0 24.5 38.0 52-53 34.415501376391134 37.0 34.0 38.0 25.0 38.0 54-55 34.37144059560937 37.0 34.0 38.0 25.0 38.0 56-57 34.34608816222304 37.0 34.0 38.0 24.5 38.0 58-59 34.35660932042467 37.0 34.0 38.0 25.0 38.0 60-61 34.33869590498225 37.0 34.0 38.0 24.5 38.0 62-63 34.31204433727885 37.0 34.0 38.0 24.5 38.0 64-65 34.33081977611789 37.0 34.0 38.0 24.0 38.0 66-67 34.23065225081628 37.0 34.0 38.0 24.0 38.0 68-69 33.99596231493943 37.0 34.0 38.0 23.5 38.0 70-71 34.16157449386621 37.0 34.0 38.0 24.0 38.0 72-73 34.1237999780428 37.0 34.0 38.0 24.0 38.0 74-75 34.13740530957619 37.0 34.0 38.0 24.0 38.0 76 32.72945070405354 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 5.0 13 23.0 14 90.0 15 265.0 16 576.0 17 999.0 18 1361.0 19 1490.0 20 1448.0 21 1439.0 22 1550.0 23 2009.0 24 2364.0 25 2842.0 26 3514.0 27 4259.0 28 5197.0 29 6311.0 30 7808.0 31 9482.0 32 11719.0 33 14517.0 34 18708.0 35 25432.0 36 38601.0 37 83923.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.257179801002714 18.703874632521867 9.493235962640231 24.545709603835192 2 24.111444987049317 20.707265800034968 31.10115356621519 24.080135646700523 3 19.42480269016358 22.96438460881622 29.7442799461642 27.866532754856 4 13.862718707940779 17.09693290449025 38.373052823329935 30.66729556423904 5 13.310942411144499 34.35325881439254 36.776683080351155 15.55911569411181 6 28.741567825383335 38.46372792589852 18.96248165150671 13.832222597211436 7 28.569163146060106 29.91383832181936 22.635026612939296 18.88197191918124 8 25.555334176381372 34.144258802194095 19.9407968837041 20.359610137720434 9 24.766094830705924 16.373565157990182 21.767310608987 37.09302940231689 10-11 25.19608999198969 24.577018944183983 28.124326544221397 22.102564519604933 12-13 25.33596548653495 23.24088267942895 26.62920388886404 24.79394794517206 14-15 23.664575311161983 24.5235490967052 24.182805886155986 27.629069705976832 16-17 23.972992644338092 26.710526850808957 25.62486530884428 23.69161519600867 18-19 23.081489674016908 26.754237942854353 26.931725307299143 23.232547075829597 20-21 23.024766908060325 27.012235039624617 26.642825484989814 23.320172567325248 22-23 23.445409928720423 26.33278169257481 27.0376484652324 23.184159913472367 24-25 23.068071385295998 26.641199025750918 27.00898212114682 23.281747467806273 26-27 22.353039242395287 26.91017472238374 27.23587318497314 23.500912850247833 28-29 22.99345756771153 26.455172750301912 28.01067770490337 22.54069197708319 30-31 23.34009669300175 26.37283325133268 27.307030776674946 22.98003927899062 32-33 22.62384470567187 27.018740876580203 26.98519515477793 23.372219262969995 34-35 23.710319477256 26.169932461280105 27.14519808240456 22.974549979059336 36-37 23.732073369576266 25.89526415731114 26.735127046797295 23.6375354263153 38-39 23.09226496647461 26.63286342215156 27.39099673488308 22.88387487649075 40-41 23.124590843847713 25.658817645456285 27.93484404288973 23.281747467806273 42-43 22.8739128136525 25.925963575445344 27.556285655036127 23.64383795586603 44-45 22.25463845844193 25.968861437871286 27.649603753867925 24.126896349818853 46-47 22.67426494207772 25.28981470563121 28.181252617582835 23.854667734708237 48-49 21.955776573294354 25.53459682108542 28.627105756445857 23.88252084917437 50-51 21.927516844018495 25.443921718516833 28.314418967767647 24.314142469697032 52-53 21.680295039705936 25.26338474299911 28.766981250991126 24.28933896630383 54-55 20.943915619294685 25.884488864853434 28.914785734326014 24.256809781525863 56-57 20.74911255596082 25.94955495647153 28.727366619092347 24.5739658684753 58-59 21.151664491259744 25.666142129296425 28.277240364167184 24.904953015276643 60-61 20.805996791789582 25.467864019045955 28.57929952039491 25.146839668769555 62-63 20.256046907370546 25.108617643530824 29.21748535669485 25.417850092403775 64-65 21.15792405608879 25.28244653490911 28.380463665695526 25.17916574330657 66-67 21.16040678076371 25.044423029223644 27.844598688249956 25.95057150176269 68-69 21.01056800484689 25.093623821315735 27.517881031671486 26.37792714216589 70-71 21.44239644453119 24.99684870959741 27.637223448853543 25.92353139701786 72-73 21.499119671777855 24.372486591767608 27.35645363943545 26.77194009701908 74-75 21.69023018651573 24.836437862652534 27.284888850937865 26.18844309989387 76 22.16782619656573 24.635164861974605 26.99962998052315 26.19737896093651 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 1.5 11 1.5 12 0.0 13 3.5 14 7.5 15 13.5 16 38.5 17 58.0 18 54.0 19 85.0 20 131.5 21 143.0 22 177.0 23 310.5 24 519.0 25 628.0 26 770.0 27 1029.5 28 1344.5 29 1542.0 30 1866.5 31 2444.5 32 3352.5 33 4007.0 34 4361.0 35 5400.0 36 7244.5 37 8404.0 38 9170.0 39 11139.0 40 13295.5 41 14918.5 42 15588.0 43 15922.5 44 16424.5 45 16588.5 46 16585.0 47 16322.5 48 15191.5 49 13544.5 50 12766.0 51 11753.0 52 9579.5 53 7791.0 54 7163.0 55 6589.0 56 5471.5 57 4333.0 58 3738.0 59 3295.5 60 2638.0 61 2281.5 62 2140.0 63 2019.5 64 1813.0 65 1700.0 66 1647.0 67 1621.0 68 1636.0 69 1619.0 70 1494.5 71 1402.0 72 1391.0 73 1283.5 74 1144.0 75 1101.0 76 1053.0 77 951.0 78 800.5 79 704.0 80 621.0 81 453.0 82 324.0 83 280.0 84 232.0 85 146.5 86 86.0 87 63.0 88 47.0 89 26.0 90 14.5 91 8.0 92 8.0 93 5.5 94 2.5 95 2.0 96 2.0 97 1.5 98 1.5 99 3.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 8.132296194491996E-4 58-59 8.132296194491996E-4 60-61 6.099222145868996E-4 62-63 6.099222145868996E-4 64-65 6.099222145868996E-4 66-67 8.132296194491996E-4 68-69 8.132296194491996E-4 70-71 8.132296194491996E-4 72-73 8.132296194491996E-4 74-75 8.132296194491996E-4 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 245933.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.37678268735605 #Duplication Level Percentage of deduplicated Percentage of total 1 69.26461316887168 29.35211460181055 2 14.309086740368052 12.127461185022097 3 5.453758839087874 6.933382594598221 4 2.535787561542644 4.298340737471724 5 1.4746698856640734 3.124588264018731 6 1.0146832929546548 2.579940804121814 7 0.797177445498207 2.364727075979739 8 0.6674737287819735 2.2628311323290333 9 0.5357748514943966 2.043397300601565 >10 3.7793577735175727 30.202790238063056 >50 0.16262811959330603 4.47746270880218 >100 0.004988592625561535 0.2329633571813032 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002033074048622999 0.0 2 0.0 0.0 0.0 0.002033074048622999 0.0 3 0.0 0.0 0.0 0.002033074048622999 0.0 4 0.0 0.0 0.0 0.004066148097245998 0.0 5 0.0 0.0 0.0 0.004879377716695198 0.0 6 0.0 0.0 0.0 0.004879377716695198 0.0 7 0.0 0.0 0.0 0.004879377716695198 0.0 8 0.0 0.0 0.0 0.004879377716695198 0.0 9 0.0 0.0 0.0 0.005285992526419797 0.0 10 0.0 0.0 0.0 0.006099222145868997 0.0 11 0.0 0.0 0.0 0.006099222145868997 0.0 12 0.0 0.0 0.0 0.0065058369555935965 0.0 13 0.0 0.0 0.0 0.006912451765318197 0.0 14 0.0 0.0 0.0 0.007319066575042796 0.0 15 0.0 0.0 0.0 0.007725681384767396 0.0 16 0.0 0.0 0.0 0.007725681384767396 0.0 17 0.0 0.0 0.0 0.008945525813941195 0.0 18 0.0 0.0 0.0 0.008945525813941195 0.0 19 0.0 0.0 0.0 0.009758755433390396 0.0 20 0.0 0.0 0.0 0.010571985052839595 0.0 21 0.0 0.0 0.0 0.011385214672288793 0.0 22 0.0 0.0 0.0 0.012198444291737994 0.0 23 0.0 0.0 0.0 0.012198444291737994 0.0 24 0.0 0.0 0.0 0.012198444291737994 0.0 25 0.0 0.0 0.0 0.012605059101462594 0.0 26 0.0 0.0 0.0 0.014638133150085593 0.0 27 0.0 0.0 0.0 0.022363814534852988 0.0 28 0.0 0.0 0.0 0.032529184777967984 0.0 29 0.0 0.0 0.0 0.04228794021135838 0.0 30 0.0 0.0 0.0 0.05773930298089317 0.0 31 0.0 0.0 0.0 0.06831128803373276 0.0 32 0.0 0.0 0.0 0.09148833218803495 0.0 33 0.0 0.0 0.0 0.12930350949242272 0.0 34 0.0 0.0 0.0 0.1841965088052437 0.0 35 0.0 0.0 0.0 0.26836577441823584 0.0 36 0.0 0.0 0.0 0.403361891246803 0.0 37 0.0 0.0 0.0 0.6184611255911163 0.0 38 0.0 0.0 0.0 0.9022782627788869 0.0 39 0.0 0.0 0.0 1.2145584366473796 0.0 40 0.0 0.0 0.0 1.5638405582008108 0.0 41 0.0 0.0 0.0 1.9419923312446885 0.0 42 0.0 0.0 0.0 2.3758503332208365 0.0 43 0.0 0.0 0.0 2.915834800535105 0.0 44 0.0 0.0 0.0 3.557066355470799 0.0 45 0.0 0.0 0.0 4.344272627097624 0.0 46 0.0 0.0 0.0 5.254276571261278 0.0 47 0.0 0.0 0.0 6.186237715150061 0.0 48 0.0 0.0 0.0 7.04094204519117 0.0 49 0.0 0.0 0.0 7.837093842631936 0.0 50 0.0 0.0 0.0 8.58973785543217 0.0 51 0.0 0.0 0.0 9.280576417154265 0.0 52 0.0 0.0 0.0 9.97670097140278 0.0 53 0.0 0.0 0.0 10.697222414234771 0.0 54 0.0 0.0 0.0 11.478329463715728 0.0 55 0.0 0.0 0.0 12.302131068217767 0.0 56 0.0 0.0 0.0 13.165780924072816 0.0 57 0.0 0.0 0.0 14.008286809822188 0.0 58 0.0 0.0 0.0 14.910565072601074 0.0 59 0.0 0.0 0.0 15.74819158063375 0.0 60 0.0 0.0 0.0 16.55084921503011 0.0 61 0.0 0.0 0.0 17.339681945895833 0.0 62 0.0 0.0 0.0 18.03418004090545 0.0 63 0.0 0.0 0.0 18.788450512944582 0.0 64 0.0 0.0 0.0 19.497586741104286 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGGTCTA 20 0.0069455723 52.5 1 CACTTCG 20 0.0069455723 52.5 67 GTTTGCG 35 2.0826466E-5 50.0 38 TACTCGC 30 5.870341E-4 46.666668 20 GCGGTTT 40 4.5842247E-5 43.75 42 CGCGGTA 35 0.0012538452 40.0 43 TAACGGC 35 0.0012538452 40.0 36 TATCCAC 45 9.180815E-5 38.888885 65 ACCACGT 55 6.6777593E-6 38.18182 36 AACTCTC 55 6.6777593E-6 38.18182 19 GTAACCA 55 6.6777593E-6 38.18182 33 ACGTTCT 60 1.2126682E-5 35.000004 39 AGTAACC 60 1.2126682E-5 35.000004 32 GTGCTAG 70 8.6629916E-7 35.0 27 ACTCGCA 40 0.0024157492 35.0 21 TTTGCGG 50 1.7065837E-4 35.0 39 GGTCTTT 50 1.7065837E-4 35.0 58 TTAACGG 55 2.9866648E-4 31.818184 35 TAGATGG 55 2.9866648E-4 31.818184 32 ATTAGCG 45 0.0043019424 31.111109 8 >>END_MODULE