##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781212_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 223719 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.2427330713976 34.0 34.0 34.0 32.0 34.0 2 33.273052355857125 34.0 34.0 34.0 32.0 34.0 3 33.317424984020136 34.0 34.0 34.0 33.0 34.0 4 33.358060781605495 34.0 34.0 34.0 33.0 34.0 5 33.384383981691315 34.0 34.0 34.0 33.0 34.0 6 36.810784957915956 38.0 37.0 38.0 34.0 38.0 7 36.70875964938159 38.0 37.0 38.0 34.0 38.0 8 36.49315435881619 38.0 37.0 38.0 34.0 38.0 9 36.432404042571264 38.0 37.0 38.0 34.0 38.0 10-11 36.34450136108243 38.0 37.0 38.0 34.0 38.0 12-13 36.284318721253 38.0 37.0 38.0 34.0 38.0 14-15 36.30418292590258 38.0 37.0 38.0 34.0 38.0 16-17 36.251849418243424 38.0 37.0 38.0 34.0 38.0 18-19 36.24984914111005 38.0 37.0 38.0 34.0 38.0 20-21 36.18519213835213 38.0 37.0 38.0 33.5 38.0 22-23 36.232993174473336 38.0 37.0 38.0 34.0 38.0 24-25 36.23376646596847 38.0 37.0 38.0 34.0 38.0 26-27 36.001150997456634 38.0 36.5 38.0 32.0 38.0 28-29 35.98782177642489 38.0 37.0 38.0 32.0 38.0 30-31 36.01959824601397 38.0 37.0 38.0 32.0 38.0 32-33 35.973681269807216 38.0 37.0 38.0 32.0 38.0 34-35 35.97311582833822 38.0 37.0 38.0 32.0 38.0 36-37 35.94133488885611 38.0 37.0 38.0 32.0 38.0 38-39 35.84872764494746 38.0 36.0 38.0 31.0 38.0 40-41 35.92155114228117 38.0 37.0 38.0 32.0 38.0 42-43 35.93653869362906 38.0 36.5 38.0 32.0 38.0 44-45 35.90796266745337 38.0 36.5 38.0 32.0 38.0 46-47 35.92877001953343 38.0 37.0 38.0 32.0 38.0 48-49 35.91307399013942 38.0 37.0 38.0 32.0 38.0 50-51 35.819682280003036 38.0 36.0 38.0 31.0 38.0 52-53 35.8479007147359 38.0 36.0 38.0 31.0 38.0 54-55 35.853134959480414 38.0 36.0 38.0 32.0 38.0 56-57 35.81262208395353 38.0 36.0 38.0 31.0 38.0 58-59 35.796584107742305 38.0 36.0 38.0 31.0 38.0 60-61 35.797109320173966 38.0 36.0 38.0 31.0 38.0 62-63 35.7670492895105 38.0 36.0 38.0 31.0 38.0 64-65 35.733542971316695 38.0 36.0 38.0 31.0 38.0 66-67 35.688544558128726 38.0 36.0 38.0 31.0 38.0 68-69 35.60672987095418 38.0 36.0 38.0 31.0 38.0 70-71 35.48678029134763 38.0 36.0 38.0 31.0 38.0 72-73 35.39690638703016 38.0 36.0 38.0 31.0 38.0 74-75 35.39358078661178 38.0 36.0 38.0 31.0 38.0 76 34.45779303501267 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 2.0 21 4.0 22 34.0 23 68.0 24 178.0 25 343.0 26 727.0 27 1107.0 28 1894.0 29 3012.0 30 4640.0 31 6801.0 32 9872.0 33 13770.0 34 18793.0 35 25945.0 36 38782.0 37 97747.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.89739360537102 18.48211372301861 9.993786848680712 26.626705822929658 2 23.49062886925116 20.784108636280337 31.298191034288546 24.42707146017996 3 19.46012631917718 22.57608875419611 30.295147037131404 27.668637889495308 4 13.519638475051293 18.394056830220055 37.34685028987256 30.739454404856094 5 12.951962059547913 34.74671351114568 37.1264845632244 15.174839866082005 6 28.95373213718996 39.52234723023078 18.027525601312362 13.496395031266903 7 27.718700691492455 30.113222390588195 21.98561588421189 20.18246103370746 8 24.710909667931645 36.04655840585735 19.017606908666675 20.22492501754433 9 24.063222167093542 16.131843964973918 20.50116440713574 39.30376946079681 10-11 24.18122734322968 25.627014245549102 28.11026332139872 22.0814950898225 12-13 24.343931449720408 23.48303005109088 26.78158761660833 25.39145088258038 14-15 22.681354735181188 24.238888963387105 23.67501195696387 29.404744344467836 16-17 23.850008269302116 27.539904970074065 24.927922974803213 23.682163785820606 18-19 23.491746342510023 26.760802613993445 25.75418270240793 23.993268341088598 20-21 22.420312981910342 26.875678865004758 25.676853552894478 25.027154600190414 22-23 22.67085048654786 27.332054943925193 26.144404364403563 23.85269020512339 24-25 23.337535032786665 27.35574537701313 26.047407685534086 23.25931190466612 26-27 22.80070087922796 27.63734863824709 26.26308002449501 23.29887045802994 28-29 23.23673894483705 26.411927462575818 27.094927118394057 23.256406474193074 30-31 23.792123154492913 26.027740156178066 27.30121268198052 22.878924007348502 32-33 22.080824605867182 27.755130319731446 26.231120289291475 23.932924785109893 34-35 23.06889446135554 26.115797048976617 28.001868415288822 22.81344007437902 36-37 23.143988664351262 26.514064518436076 26.927753118867866 23.4141936983448 38-39 22.051993795788466 26.660900504650925 27.497440986237198 23.78966471332341 40-41 22.334491035629515 25.201256933921574 28.35387249183127 24.11037953861764 42-43 23.143541675047715 25.685793338965397 27.570523737366965 23.60014124861992 44-45 21.735748863529697 26.708951854782114 27.827095597602348 23.728203684085837 46-47 22.758460390042867 25.09934337271309 27.34233569790675 24.799860539337292 48-49 22.22766059208203 24.996088843593974 28.075621650373904 24.70062891395009 50-51 21.410787639851776 25.002123199191846 28.47590057169932 25.11118858925706 52-53 20.998440007330625 24.912948833134426 29.796753963677645 24.291857195857304 54-55 20.10647285210465 25.57717493820373 29.240475775414694 25.07587643427693 56-57 20.931838601102275 25.374018299742083 28.218211238205072 25.475931860950567 58-59 20.195870712813843 25.384969537678963 29.199352759488466 25.21980699001873 60-61 20.823220200340607 25.95108149061993 27.853691461163333 25.372006847876133 62-63 19.114156598232604 26.75342729048494 28.066458369651215 26.06595774163124 64-65 19.59623456210693 27.221201596645795 27.199299120772043 25.98326472047524 66-67 19.84185518440544 26.846177570970724 26.615531090341012 26.696436154282825 68-69 19.817270772710412 27.473750553149262 26.052548062524867 26.656430611615463 70-71 20.336001859475502 26.619777488724694 25.998685851447572 27.04553480035223 72-73 20.31566384616416 25.583656283105142 25.861460135258962 28.239219735471732 74-75 20.237664212695393 25.792623782512887 26.063946289765287 27.905765715026437 76 20.830595523849112 25.641541397914345 26.034891985034797 27.49297109320174 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 2.0 14 7.0 15 16.0 16 35.0 17 48.0 18 51.5 19 73.5 20 124.5 21 157.0 22 179.5 23 272.0 24 460.5 25 579.0 26 732.0 27 954.0 28 1247.0 29 1471.0 30 1690.5 31 2173.0 32 3048.5 33 3661.0 34 3959.5 35 4919.0 36 6280.0 37 6980.0 38 7795.0 39 9845.5 40 12378.5 41 14206.0 42 14736.0 43 15240.5 44 15277.0 45 14911.5 46 15014.0 47 14712.5 48 13605.0 49 12142.0 50 11485.0 51 10538.0 52 8594.0 53 7155.0 54 6713.0 55 6210.0 56 4930.5 57 3798.5 58 3443.0 59 2958.0 60 2248.5 61 1938.5 62 1853.0 63 1762.5 64 1645.0 65 1573.5 66 1498.5 67 1468.0 68 1487.0 69 1491.5 70 1429.5 71 1382.0 72 1355.5 73 1267.5 74 1172.5 75 1139.0 76 1023.0 77 860.0 78 715.0 79 617.0 80 552.0 81 409.0 82 283.0 83 235.0 84 197.0 85 119.0 86 75.5 87 72.0 88 50.0 89 21.5 90 12.5 91 6.0 92 2.0 93 1.0 94 0.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 223719.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.11620380924284 #Duplication Level Percentage of deduplicated Percentage of total 1 61.9285611060263 22.98553095624422 2 17.96208873259791 13.333690924776171 3 6.905438604942435 7.68910999959771 4 2.9758177176164557 4.41804227624833 5 1.849800086709379 3.4328778512330205 6 1.2729418565441495 2.8348061630885173 7 0.9345344188063008 2.428045896861688 8 0.7936316778264849 2.3565276082943334 9 0.5961269810684522 1.991337347297279 >10 4.578736933378294 31.989236497570612 >50 0.19027891516932416 4.593709072541894 >100 0.010838672383062768 0.6378537361600937 >500 0.0 0.0 >1k 0.0012042969314514187 1.3092316700861348 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGT 2929 1.3092316700861348 No Hit TCTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCG 327 0.14616550225953093 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0013409679106378984 0.0 2 0.0 0.0 0.0 0.0013409679106378984 0.0 3 0.0 0.0 0.0 0.0013409679106378984 0.0 4 0.0 0.0 0.0 0.0035759144283677292 0.0 5 0.0 0.0 0.0 0.004469893035459661 0.0 6 0.0 0.0 0.0 0.004469893035459661 0.0 7 0.0 0.0 0.0 0.004469893035459661 0.0 8 0.0 0.0 0.0 0.004469893035459661 0.0 9 0.0 0.0 0.0 0.004916882339005627 0.0 10 0.0 0.0 0.0 0.00581086094609756 0.0 11 0.0 0.0 0.0 0.00581086094609756 0.0 12 0.0 0.0 0.0 0.006257850249643526 0.0 13 0.0 0.0 0.0 0.006704839553189492 0.0 14 0.0 0.0 0.0 0.006704839553189492 0.0 15 0.0 0.0 0.0 0.0071518288567354584 0.0 16 0.0 0.0 0.0 0.0071518288567354584 0.0 17 0.0 0.0 0.0 0.008492796767373356 0.0 18 0.0 0.0 0.0 0.008492796767373356 0.0 19 0.0 0.0 0.0 0.008939786070919322 0.0 20 0.0 0.0 0.0 0.009833764678011255 0.0 21 0.0 0.0 0.0 0.010280753981557221 0.0 22 0.0 0.0 0.0 0.010727743285103187 0.0 23 0.0 0.0 0.0 0.011174732588649153 0.0 24 0.0 0.0 0.0 0.011174732588649153 0.0 25 0.0 0.0 0.0 0.012068711195741086 0.0 26 0.0 0.0 0.0 0.014303657713470917 0.0 27 0.0 0.0 0.0 0.021902475873752342 0.0 28 0.0 0.0 0.0 0.03218322985530956 0.0 29 0.0 0.0 0.0 0.04201699453332082 0.0 30 0.0 0.0 0.0 0.061684523889343326 0.0 31 0.0 0.0 0.0 0.07330624578153845 0.0 32 0.0 0.0 0.0 0.09789065747656658 0.0 33 0.0 0.0 0.0 0.13677872688506565 0.0 34 0.0 0.0 0.0 0.19622830425667914 0.0 35 0.0 0.0 0.0 0.2851791756623264 0.0 36 0.0 0.0 0.0 0.4317916672254033 0.0 37 0.0 0.0 0.0 0.6588622334267541 0.0 38 0.0 0.0 0.0 0.9574510881954594 0.0 39 0.0 0.0 0.0 1.2913520979442963 0.0 40 0.0 0.0 0.0 1.6654821450122699 0.0 41 0.0 0.0 0.0 2.0700074647213693 0.0 42 0.0 0.0 0.0 2.5304064473737142 0.0 43 0.0 0.0 0.0 3.0913780233239017 0.0 44 0.0 0.0 0.0 3.7658848823747646 0.0 45 0.0 0.0 0.0 4.590580147417072 0.0 46 0.0 0.0 0.0 5.553842096558629 0.0 47 0.0 0.0 0.0 6.518445013610824 0.0 48 0.0 0.0 0.0 7.4186814709524 0.0 49 0.0 0.0 0.0 8.256786415101086 0.0 50 0.0 0.0 0.0 9.038123717699435 0.0 51 0.0 0.0 0.0 9.759564453622625 0.0 52 0.0 0.0 0.0 10.476535296510354 0.0 53 0.0 0.0 0.0 11.225689369253393 0.0 54 0.0 0.0 0.0 12.040997858921235 0.0 55 0.0 0.0 0.0 12.8925124821763 0.0 56 0.0 0.0 0.0 13.790513993000147 0.0 57 0.0 0.0 0.0 14.705054108055194 0.0 58 0.0 0.0 0.0 15.642837666894632 0.0 59 0.0 0.0 0.0 16.543968102843298 0.0 60 0.0 0.0 0.0 17.394588747491273 0.0 61 0.0 0.0 0.0 18.210791215766207 0.0 62 0.0 0.0 0.0 18.93089098377876 0.0 63 0.0 0.0 0.0 19.714463232894836 0.0 64 0.0 0.0 0.0 20.450207626531498 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGTAA 15 0.0022225562 70.0 30 TATGCCG 440 0.0 58.06818 43 TCTCGTA 425 0.0 56.823536 38 TCGTATG 450 0.0 56.777775 40 CCGTCTT 420 0.0 56.666664 47 CGTCTTC 415 0.0 56.50602 48 CGTATGC 455 0.0 56.153847 41 TACCTCG 25 2.3868619E-4 56.000004 36 ATCTCGT 435 0.0 55.517242 37 CTCGTAT 455 0.0 55.384617 39 GCCGTCT 450 0.0 53.666664 46 GTATGCC 480 0.0 53.229164 42 TCTTCTG 435 0.0 53.10345 50 GTCTTCT 435 0.0 53.10345 49 ATGCCGT 470 0.0 52.87234 44 GGATGTT 20 0.006944757 52.5 15 CGTAAGA 20 0.006944757 52.5 32 TGCCGTC 470 0.0 52.12766 45 CTTGAAA 470 0.0 51.38298 57 CTGCTTG 475 0.0 48.631577 54 >>END_MODULE